8Y1X

Cryo-EM structure of the aspartate:alanine antiporter AspT WT


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structure and molecular mechanism of the aspartate:alanine antiporter AspT from Tetragenococcus halophilus

Nanatani, K.Kanno, R.Kawabata, T.Watanabe, S.Hidaka, M.Yamanaka, T.Toda, K.Fujiki, T.Kunii, K.Miyamoto, A.Chiba, F.Ogasawara, S.Murata, T.Humbel, B.M.Inaba, K.Mitsuoka, K.Guan, L.Abe, K.Yamamoto, M.Koshiba, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aspartate/alanine antiporter
A, B
543Tetragenococcus halophilusMutation(s): 0 
Gene Names: aspT
Membrane Entity: Yes 
UniProt
Find proteins for Q8L3K8 (Tetragenococcus halophilus)
Explore Q8L3K8 
Go to UniProtKB:  Q8L3K8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8L3K8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan16K07653
Japan Society for the Promotion of Science (JSPS)Japan20K05779
Japan Society for the Promotion of Science (JSPS)Japan23K05004
Japan Agency for Medical Research and Development (AMED)JapanJP23ama121019
Japan Agency for Medical Research and Development (AMED)JapanJP23ama121038

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release