8YGW

The Crystal Structure of MAPK11 from Biortus

• PDB DOI: https://doi.org/10.2210/pdb8YGW/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-02-27 Released: 2024-03-13 
• Deposition Author(s): Wang, F., Cheng, W., Yuan, Z., Lin, D., Guo, S.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.278 
• R-Value Work: 0.205 

Starting Model: experimental

Literature

The Crystal Structure of MAPK11 from Biortus.

Wang, F., Cheng, W., Yuan, Z., Lin, D., Guo, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 41.93 kDa 
• Atom Count: 2,697 
• Modelled Residue Count: 326 
• Deposited Residue Count: 364 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitogen-activated protein kinase 11	A	364	Homo sapiens	Mutation(s): 0  Gene Names: MAPK11, PRKM11, SAPK2, SAPK2B EC: 2.7.11.24
UniProt & NIH Common Fund Data Resources
Find proteins for Q15759 (Homo sapiens) Explore Q15759  Go to UniProtKB:  Q15759
PHAROS:  Q15759 GTEx:  ENSG00000185386

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
B96 (Subject of Investigation/LOI)	B [auth A]	1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA C31 H37 N5 O3 MVCOAUNKQVWQHZ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.278 
• R-Value Work: 0.205 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.061	α = 90
b = 61.86	β = 90
c = 147.437	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-13 
Deposition Author(s): Wang, F., Cheng, W., Yuan, Z., Lin, D., Guo, S.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-03-13
  Type: Initial release