8YLX | pdb_00008ylx

Single particle cryo-EM reconstruction of Oryza sativa recombinant human serum albumin

• PDB DOI: https://doi.org/10.2210/pdb8YLX/pdb
• EM Map EMD-39392: EMDB EMDataResource

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Oryza sativa
• Mutation(s): No 


• Deposited: 2024-03-07 Released: 2025-03-19 
• Deposition Author(s): Dong, C.J., Yang, D.C., Duan, B.R.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.18 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Single particle cryo-EM reconstruction of Oryza sativa recombinant human serum albumin

Dong, C.J., Yang, D.C., Duan, B.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 67 kDa 
• Atom Count: 4,660 
• Modeled Residue Count: 582 
• Deposited Residue Count: 585 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Albumin	A	585	Homo sapiens	Mutation(s): 0  Gene Names: ALB, GIG20, GIG42, PRO0903, PRO1708, PRO2044, PRO2619, PRO2675, UNQ696/PRO1341
UniProt & NIH Common Fund Data Resources
Find proteins for P02768 (Homo sapiens) Explore P02768  Go to UniProtKB:  P02768
PHAROS:  P02768 GTEx:  ENSG00000163631

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
OCA	B [auth A], C [auth A], D [auth A]	OCTANOIC ACID (CAPRYLIC ACID) C8 H16 O2 WWZKQHOCKIZLMA-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.18 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2_4158:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-03-19 
Deposition Author(s): Dong, C.J., Yang, D.C., Duan, B.R.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32250710142

Revision History  

• Version 1.0: 2025-03-19
  Type: Initial release