8YOQ

Crystal structure of hFSP1 with both 6-OH-FAD and NADP (hFSP1-6-OH-FAD-NADP)

PDB DOI: https://doi.org/10.2210/pdb8YOQ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-03-13 Released: 2025-01-08
Deposition Author(s): Lan, H.Y., Gao, Y., Hong, T., Zhao, Z.Z., Chang, Z.H., Wang, Y.F., Wang, F.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.219
R-Value Work: 0.194
R-Value Observed: 0.196

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structural insight into 6-OH-FAD-dependent activation of hFSP1 for ferroptosis suppression.

Lan, H., Gao, Y., Hong, T., Chang, Z., Zhao, Z., Wang, Y., Wang, F.

(2024) Cell Discov 10: 88-88

PubMed: 39160155 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-024-00723-7
Primary Citation of Related Structures:
8YO8, 8YOQ, 8YOX

Organizational Affiliation

Key Laboratory of Molecular Medicine and Biotherapy in the Ministry of Industry and Information Technology, Department of Biology, School of Life Sciences, Beijing Institute of Technology, Beijing, China.

Macromolecule Content

Total Structure Weight: 41.68 kDa
Atom Count: 3,151
Modelled Residue Count: 367
Deposited Residue Count: 367
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferroptosis suppressor protein 1	A	367	Homo sapiens	Mutation(s): 0 Gene Names: AIFM2, AMID, PRG3 EC: 1.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRQ8 (Homo sapiens) Explore Q9BRQ8 Go to UniProtKB: Q9BRQ8
PHAROS: Q9BRQ8 GTEx: ENSG00000042286
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BRQ8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
6FA (Subject of Investigation/LOI) Query on 6FA Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₆ P₂ BJSUUWFQAMLNKU-OKXKTURISA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
NDP (Subject of Investigation/LOI) Query on NDP Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₃₀ N₇ O₁₇ P₃ ACFIXJIJDZMPPO-NNYOXOHSSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]