8ZZU | pdb_00008zzu

Molecular Architecture of Human Fibrin Clots

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

PDB DOI: https://doi.org/10.2210/pdb8ZZU/pdb

Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2019-03-14 Released: 2020-01-10
Deposition Author(s): Oleg Klykov, Carmen van der Zwaan, Albert J.R. Heck, Alexander B. Meijer, Richard A. Scheltema

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

wwPDB ValidationFull ReportSummary Report

This is version 1.0 of the entry. See complete history.

Literature

Missing regions in the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling

Oleg Klykov, Carmen van der Zwaan, Albert J.R. Heck, Alexander B. Meijer, Richard A. Scheltema

(2020) Proc Natl Acad Sci U S A 117: 1976-1987

DOI: https://doi.org/10.1073/pnas.1911785117

Macromolecule Content

Total Structure Weight: 256.43 kDa
Atom Count: 17,968
Modeled Residue Count: 2,252
Deposited Residue Count: 2,252
Unique protein chains: 7

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RGD-containing Alpha Domain Alpha_558-620	A [auth I], M [auth J]	63	Homo sapiens	Mutation(s): 0 Gene Names: FGA
UniProt & NIH Common Fund Data Resources
Find proteins for P02671 (Homo sapiens) Explore P02671 Go to UniProtKB: P02671
PHAROS: P02671 GTEx: ENSG00000171560
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02671
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Subunit Alpha_46-219	B [auth A], G [auth D]	174	Homo sapiens	Mutation(s): 0 Gene Names: FGA
UniProt & NIH Common Fund Data Resources
Find proteins for P02671 (Homo sapiens) Explore P02671 Go to UniProtKB: P02671
PHAROS: P02671 GTEx: ENSG00000171560
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02671
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Subunit Alpha_220-249	C [auth Z], H [auth Y]	30	Homo sapiens	Mutation(s): 0 Gene Names: FGA
UniProt & NIH Common Fund Data Resources
Find proteins for P02671 (Homo sapiens) Explore P02671 Go to UniProtKB: P02671
PHAROS: P02671 GTEx: ENSG00000171560
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02671
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Subunit Beta	D [auth B], J [auth E]	401	Homo sapiens	Mutation(s): 0 Gene Names: FGB
UniProt & NIH Common Fund Data Resources
Find proteins for P02675 (Homo sapiens) Explore P02675 Go to UniProtKB: P02675
PHAROS: P02675 GTEx: ENSG00000171564
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02675
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Subunit Gamma	E [auth C], K [auth F]	381	Homo sapiens	Mutation(s): 0 Gene Names: FGG
UniProt & NIH Common Fund Data Resources
Find proteins for P02679 (Homo sapiens) Explore P02679 Go to UniProtKB: P02679
PHAROS: P02679 GTEx: ENSG00000171557
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02679
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Interactive Alpha Domain Alpha_432-491	F [auth H], L [auth G]	60	Homo sapiens	Mutation(s): 0 Gene Names: FGA
UniProt & NIH Common Fund Data Resources
Find proteins for P02671 (Homo sapiens) Explore P02671 Go to UniProtKB: P02671
PHAROS: P02671 GTEx: ENSG00000171560
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02671
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta N-term Beta_55-84	I [auth K]	34	Homo sapiens	Mutation(s): 0 Gene Names: FGB
UniProt & NIH Common Fund Data Resources
Find proteins for P02675 (Homo sapiens) Explore P02675 Go to UniProtKB: P02675
PHAROS: P02675 GTEx: ENSG00000171564
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02675
Sequence Annotations Expand
Reference Sequence