9EUM | pdb_00009eum

NMR structure of the Staphylococcus aureus bacteriophage phi812 hub protein - lytic cleaver (CHAP) domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Conformational changes of the baseplate regulating tail contraction of Staphylococcus phage 812.

Binovsky, J.Siborova, M.Zlatohurska, M.Novacek, J.Bardy, P.Baska, R.Skubnik, K.Botka, T.Benesik, M.Pantucek, R.Tripsianes, K.Plevka, P.

(2026) EMBO J 

  • DOI: https://doi.org/10.1038/s44318-026-00834-9
  • Primary Citation Related Structures: 
    9EUJ, 9EUK, 9EUL, 9EUM, 9F04, 9F05, 9F06, 9FKO, 9TIC, 9TID, 9TIE, 9TIF, 9TIG, 9TIH, 9TII, 9TIJ, 9TIK, 9TIL, 9TIM, 9TIN, 9TIO, 9TIP, 9TIR, 9TIS, 9TIT, 9TIW

  • PubMed Abstract: 

    Phages with contractile tails employ elaborate mechanisms to penetrate bacterial cell walls and deliver their genomes into the host cytoplasm. Here, we used cryo-EM to show that the baseplate of phage 812, a member of the Kayvirus genus, which infects Gram-positive Staphylococcus strains, is formed of a core, wedge modules, and baseplate arms carrying receptor-binding proteins 1 and 2 and tripod complexes. Upon binding to a host cell, the receptor-binding proteins of phage 812 baseplate reorient and undergo conformational changes. The changes to the tripod complexes trigger the release of the central spike and weld proteins, which expose peptidoglycan-degrading domains of the hub proteins. Changes in the positions of baseplate arms are transmitted through wedge modules to tail sheath initiator proteins. The ring of the tail sheath initiator proteins expands and triggers the contraction of the tail sheath, which shortens to 50% and pushes the tail tube 10-30 nm into the bacterial cytoplasm. Homologous molecular mechanisms are probably shared by phages of the Herelleviridae family with contractile tails to infect Gram-positive bacteria.


  • Organizational Affiliation
    • Central European Institute of Technology, Brno, Czech Republic.

Macromolecule Content 

  • Total Structure Weight: 18.93 kDa 
  • Atom Count: 1,334 
  • Modeled Residue Count: 176 
  • Deposited Residue Count: 176 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Peptidase C51 domain-containing protein176Staphylococcus phage 812Mutation(s): 0 
Gene Names: 812_113812a_113812F1_113K1/420_113K1_113
UniProt
Find proteins for A0A0U1X189 (Staphylococcus phage 812)
Explore A0A0U1X189 
Go to UniProtKB:  A0A0U1X189
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1X189
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101043452
Other governmentLX22NP05103

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-09
    Type: Initial release
  • Version 1.1: 2026-07-08
    Changes: Database references