9FF3 | pdb_00009ff3

The structure of delta-ScoC, a global regulator protein from Geobacillus kaustophilus T-1

PDB DOI: https://doi.org/10.2210/pdb9FF3/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Geobacillus kaustophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-05-22 Released: 2025-06-04
Deposition Author(s): Hadad, N., Shulami, S., Pomyalov, S., Shoham, Y., Shoham, G.
Funding Organization(s): Israel Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.32 Å
R-Value Free:
0.285 (Depositor), 0.288 (DCC)
R-Value Work:
0.249 (Depositor), 0.251 (DCC)
R-Value Observed:
0.252 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

The structure of delta-ScoC, a global regulator protein from Geobacillus kaustophilus T-1

Hadad, N., Shulami, S., Pomyalov, S., Shoham, Y., Shoham, G.

To be published.

Macromolecule Content

Total Structure Weight: 24.59 kDa
Atom Count: 1,463
Modeled Residue Count: 174
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HTH-type transcriptional regulator Hpr	A [auth C]	207	Geobacillus kaustophilus	Mutation(s): 0 Gene Names: hpr, GK0652
UniProt
Find proteins for Q5L293 (Geobacillus kaustophilus (strain HTA426)) Explore Q5L293 Go to UniProtKB: Q5L293
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5L293
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.32 Å
R-Value Free: 0.285 (Depositor), 0.288 (DCC)
R-Value Work: 0.249 (Depositor), 0.251 (DCC)
R-Value Observed: 0.252 (Depositor)

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.082	α = 90
b = 80.082	β = 90
c = 164.149	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-06-04

Deposition Author(s):

Funding Organization	Location	Grant Number
Israel Science Foundation	Israel	500/10

Revision History (Full details and data files)

Version 1.0: 2025-06-04
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.