Structural basis of SIRT7 nucleosome engagement and substrate specificity
Carlos, M.Y., Babatunde, E., Polina, F., Esther, S., Dongchun, N., Henning, S., Beat, F.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H3.2 | 136 | Homo sapiens | Mutation(s): 0  Gene Names: H3C15, HIST2H3A, H3C14, H3F2, H3FM, HIST2H3C, H3C13, HIST2H3D | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q71DI3 (Homo sapiens) Explore Q71DI3  Go to UniProtKB:  Q71DI3 | |||||
PHAROS:  Q71DI3 GTEx:  ENSG00000183598  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q71DI3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H4 | 103 | Homo sapiens | Mutation(s): 0  Gene Names:  H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, H4/G... | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62805 (Homo sapiens) Explore P62805  Go to UniProtKB:  P62805 | |||||
PHAROS:  P62805 GTEx:  ENSG00000274618  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62805 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2A type 2-A | 129 | Homo sapiens | Mutation(s): 0  Gene Names: HIST2H2AA3, H2AFO, HIST2H2AA, HIST2H2AA4 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6FI13 (Homo sapiens) Explore Q6FI13  Go to UniProtKB:  Q6FI13 | |||||
PHAROS:  Q6FI13 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6FI13 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2B type 1-J | 126 | Homo sapiens | Mutation(s): 0  Gene Names: H2BC11, H2BFR, HIST1H2BJ | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06899 (Homo sapiens) Explore P06899  Go to UniProtKB:  P06899 | |||||
PHAROS:  P06899 GTEx:  ENSG00000124635  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06899 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NAD-dependent protein deacetylase sirtuin-7 | 401 | Homo sapiens | Mutation(s): 0  Gene Names: SIRT7, SIR2L7 EC: 2.3.1.286 (PDB Primary Data), 2.3.1 (PDB Primary Data) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NRC8 (Homo sapiens) Explore Q9NRC8  Go to UniProtKB:  Q9NRC8 | |||||
PHAROS:  Q9NRC8 GTEx:  ENSG00000187531  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NRC8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (149-MER) | 149 | Homo sapiens | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (149-MER) | 149 | Homo sapiens | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1IY0 (Subject of Investigation/LOI) Query on A1IY0 | L [auth A] | [[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2-(methylamino)-6-oxidanyl-2-(propylamino)-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate C20 H33 N7 O13 P2 S RTLOVKKJOOOFSD-SUAKPWHCSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | M [auth K] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
Swiss National Science Foundation | Switzerland | #TMPFP2_217187 |
Independent Research Fund Denmark - Medical Sciences | Denmark | #2028.00011B |
Swiss National Science Foundation | Switzerland | IZLCZO_206089 |
La Caixa Foundation | Spain | 100010434 |