9J1J

Cap region of monocin

• PDB DOI: https://doi.org/10.2210/pdb9J1J/pdb
• EM Map EMD-61073: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Listeria monocytogenes
• Expression System: Lactococcus lactis
• Mutation(s): No 


• Deposited: 2024-08-05 Released: 2025-01-08 
• Deposition Author(s): Wang, J.W., Gu, Z.W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.42 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of an F-type phage tail-like bacteriocin from Listeria monocytogenes

Wang, J.W., Gu, Z.W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C6  (Explore in 3D)
Global Stoichiometry: Hetero 18-mer - A12B6 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 305.92 kDa 
• Atom Count: 19,944 
• Modelled Residue Count: 2,616 
• Deposited Residue Count: 2,814 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AA protein	A [auth G], B [auth g], E [auth B], F [auth C], H [auth E], I [auth H], K [auth J], L [auth K], N [auth M], O [auth N], Q [auth P], R [auth Q]	170	Listeria monocytogenes	Mutation(s): 0  Gene Names:  lmaA, aA, A7H14_01990, A8L61_07680, AB917_02055, ABZ57_09930, AF817_12225, AP104_04170, APD71_11000, APD94_11395, ART25_13165, ARY78_13740, B1N52_06345, B4X68_12550, B5K54_07765, BB997_05830, BCZ19_12960, BCZ21_05430, CAV64_13840, CD20_13395, CW845_05245, CW895_09010, D4271_13110, D4920_13625, D4B11_08575, D4C60_14745, D4D89_13045, D4U23_07845, D5M70_13180, D5N24_12985, D7104_05135, DCT16_05880, DG57_02025, DQ70_12600, DU018_08360, E0I30_13015, E0I39_12940, E1V33_11285, E1W56_14335, E5F58_14110, EX365_09125, EXZ73_03465, EYJ21_12355, EZM42_13115, F1788_11005, F3300_10015, F6436_02005, F6515_08425, FA835_09655, FJL03_10525, FJU19_13205, FLQ76_11460, FLQ91_11040, FLQ97_00985, FNX40_02305, FPL45_04450, FV747_02065, G3O21_000404, G3R95_002798, G3R97_002705, GCV64_11950, GHH22_14070, GHO09_06915, GJW51_04795, GQG13_06300, GT011_12400, GYO01_10490, GYP27_04130, GYR60_10835, GYS09_07335, GYU24_12575, GYX23_01965, GYY14_04840, GZK27_10205, KV70_02000, QD52_06145
UniProt
Find proteins for O05551 (Listeria monocytogenes) Explore O05551  Go to UniProtKB:  O05551

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DUF5072 domain-containing protein	C [auth F], D [auth A], G [auth D], J [auth I], M [auth L], P [auth O]	129	Listeria monocytogenes	Mutation(s): 0  Gene Names: AP104_04165, B4X68_12545
UniProt
Find proteins for A0A9P1T1V5 (Listeria monocytogenes) Explore A0A9P1T1V5  Go to UniProtKB:  A0A9P1T1V5

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.42 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-01-08 
Deposition Author(s): Wang, J.W., Gu, Z.W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32371254
National Natural Science Foundation of China (NSFC)	China	32171190

Revision History  

• Version 1.0: 2025-01-08
  Type: Initial release