9M4T | pdb_00009m4t

CryoEM structure of the alpha1AAR complex with silodosin


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.19 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular mechanism of antagonist recognition and regulation of the alpha 1A -adrenoceptor.

Liu, S.Jiao, H.Tao, Y.Wang, D.Guo, Q.

(2025) J Biological Chem 301: 110348-110348

  • DOI: https://doi.org/10.1016/j.jbc.2025.110348
  • Primary Citation of Related Structures:  
    9M4Q, 9M4T

  • PubMed Abstract: 

    The α 1 -adrenoceptor (α 1 AR) is a critically important class of G protein-coupled receptors (GPCRs), comprising three subtypes: α 1A AR, α 1B AR, and α 1D AR. Currently, drugs targeting α 1 AR have been used in the treatment of various diseases. Notably, antagonists of α 1 AR play a pivotal role in the management of benign prostatic hyperplasia (BPH). In recent years, researchers have developed selective antagonists for the α 1A AR subtype that have a minimal impact on blood pressure for the treatment of BPH. However, these agents still exhibit certain side effects, necessitating the continuous development of new medications to mitigate adverse reactions while achieving more precise regulation. We report the cryo-EM structures of the α 1 AR selective antagonist doxazosin and the α 1A AR subtype selective antagonist silodosin in complex with α 1A AR, demonstrating that M292 6.55 and V185 5.39 are key residues that confer subtype selectivity to silodosin. Additionally, modifications to α 1B AR enhanced silodosin's inhibitory efficacy against α 1B AR. These findings deepen our understanding of the recognition patterns of α 1A AR antagonists, revealing the molecular principles underlying the selective binding of silodosin to α 1A AR and promoting further research and development of subtype selective drugs targeting α 1A AR.


  • Organizational Affiliation

    Department of Laboratory Medicine, The First Affiliated Hospital of USTC, MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics, Hefei National Center for Cross-disciplinary Sciences, Biomedical Sciences and Health Laboratory of Anhui Province, Center for Advanced Interdisciplinary Science and Biomedicine of IHM, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-1A adrenergic receptor323Homo sapiensMutation(s): 0 
Gene Names: ADRA1AADRA1C
UniProt & NIH Common Fund Data Resources
Find proteins for P35348 (Homo sapiens)
Explore P35348 
Go to UniProtKB:  P35348
PHAROS:  P35348
GTEx:  ENSG00000120907 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35348
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1EMV
Query on A1EMV

Download Ideal Coordinates CCD File 
B [auth A]Silodosin
C25 H32 F3 N3 O4
PNCPYILNMDWPEY-QGZVFWFLSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.19 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-02
    Type: Initial release
  • Version 1.1: 2025-07-09
    Changes: Data collection, Database references
  • Version 1.2: 2025-07-16
    Changes: Data collection, Database references