9RP3 | pdb_00009rp3

Structure of Avast type 5 activator (Gp316, JADA jumbophage protein)

PDB DOI: https://doi.org/10.2210/pdb9RP3/pdb
EM Map EMD-54139: EMDB EMDataResource

Classification: UNKNOWN FUNCTION
Organism(s): Pseudomonas phage vB_PA32_GUMS
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-06-23 Released: 2025-07-02
Deposition Author(s): Pacesa, M., Muralidharan, A., Brouns, S.J.J.
Funding Organization(s): European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Molecular basis for anti-jumbo phage immunity by AVAST Type V

Muralidharan, A., Rita Costa, A., Fierlier, D., van den Berg, D.F., van den Bossche, H., Zoumaro-Djayoon, A., Pabst, M., Pacesa, M., Correia, B.E., Brouns, S.J.J.

To be published.

Macromolecule Content

Total Structure Weight: 160.42 kDa
Atom Count: 6,349
Modeled Residue Count: 799
Deposited Residue Count: 1,442
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp316/JADA	A, B	721	Pseudomonas phage vB_PA32_GUMS	Mutation(s): 0
UniProt
Find proteins for A0A8T8BGC1 (Pseudomonas phage vB_PA32_GUMS) Explore A0A8T8BGC1 Go to UniProtKB: A0A8T8BGC1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8T8BGC1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.2_5419
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-07-02

Deposition Author(s):

Muralidharan, A.

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	101003229

Revision History (Full details and data files)

Version 1.0: 2025-07-02
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.