9SSJ | pdb_00009ssj

Dishevelled 2 PDZ domain in complex with Daple peptide

PDB DOI: https://doi.org/10.2210/pdb9SSJ/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-09-25 Released: 2026-10-07
Deposition Author(s): Renko, M., Bienz, M., Gammons, M.V.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.207 (Depositor), 0.217 (DCC)
R-Value Work:
0.173 (Depositor), 0.181 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Dishevelled 2 PDZ domain in complex with Daple peptide

Renko, M., Gammons, M.V.

To be published.

Macromolecule Content

Total Structure Weight: 23.67 kDa
Atom Count: 1,922
Modeled Residue Count: 223
Deposited Residue Count: 224
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Segment polarity protein dishevelled homolog DVL-2	A, B	112	Homo sapiens	Mutation(s): 0 Gene Names: DVL2
UniProt & NIH Common Fund Data Resources
Find proteins for O14641 (Homo sapiens) Explore O14641 Go to UniProtKB: O14641
PHAROS: O14641 GTEx: ENSG00000004975
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O14641
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.207 (Depositor), 0.217 (DCC)
R-Value Work: 0.173 (Depositor), 0.181 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.664	α = 90
b = 52.762	β = 90
c = 65.475	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	--

Revision History (Full details and data files)

Version 1.0: 2026-10-07
Type: Initial release