9V95 | pdb_00009v95

Cryo-EM structure of the ArlB filament of Haloarcula marismortui


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.18 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9V95

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Literature

Two types of sheathed archaellum structures from Haloarcula marismortui differ in their outer layer architectures.

Meshcheryakov, V.A.Hyun, J.Shibata, S.Syutkin, A.S.Pyatibratov, M.G.Wolf, M.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-72670-8
  • Primary Citation Related Structures: 
    9V95, 9V96, 9XTB

  • PubMed Abstract: 

    Many archaea swim by means of rotating helical filaments called archaella. Most archaella are about 10 nm in diameter and comprise multiple copies of the protein archaellin. Here, we describe two archaellum structures formed by the ArlA2 or ArlB archaellins from the haloarchaeon Haloarcula marismortui. We found that both filaments have an additional proteinaceous outer sheath surrounding their inner core, a feature not observed previously in archaea. The outer sheath structures of the two filaments differ fundamentally. The outer domain of ArlB archaellin rotates by 180 ° , forming stable dimers that likely increase the filament rigidity. In contrast, neither rotation nor dimerization of the outer domain was observed in ArlA2 filaments. 3D variability analysis demonstrated that the motions of ArlA2 and ArlB filaments are significantly distinct. Additionally, the ArlB filament displays a larger negatively charged surface area than ArlA2, which may help adaptation to higher salt concentrations. Our structural findings provide insight into how the two filaments can adapt to their different environments. Larger archaellins with additional outer domains can be found in various groups of archaea. We propose that such proteins may allow hosts to modify the properties of their archaella to enhance environmental adaptation.


  • Organizational Affiliation
    • Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Kunigami, Okinawa, Japan.

Macromolecule Content 

  • Total Structure Weight: 1,546.47 kDa 
  • Atom Count: 104,772 
  • Modeled Residue Count: 14,547 
  • Deposited Residue Count: 14,982 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellin454Haloarcula marismortuiMutation(s): 0 
UniProt
Find proteins for Q5V0B8 (Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809))
Explore Q5V0B8 
Go to UniProtKB:  Q5V0B8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5V0B8
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NA

Query on NA



Download:Ideal Coordinates CCD File
AB [auth Y]
BB [auth Z]
CB [auth a]
DB [auth c]
EB [auth d]
AB [auth Y],
BB [auth Z],
CB [auth a],
DB [auth c],
EB [auth d],
FB [auth e],
GB [auth f],
HA [auth A],
HB [auth g],
IA [auth B],
IB [auth h],
JA [auth C],
JB [auth i],
KA [auth D],
KB [auth k],
LA [auth E],
LB [auth l],
MA [auth F],
MB [auth m],
NA [auth G],
NB [auth n],
OA [auth H],
PA [auth I],
QA [auth J],
RA [auth K],
SA [auth M],
TA [auth N],
UA [auth O],
VA [auth Q],
WA [auth S],
XA [auth U],
YA [auth V],
ZA [auth W]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.18 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207
RECONSTRUCTIONcryoSPARC4.7.1

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentJapan--

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-27
    Type: Initial release