9ZBD | pdb_00009zbd

Human GGPPS in the Closed Hexamer Conformation

PDB DOI: https://doi.org/10.2210/pdb9ZBD/pdb
EM Map EMD-73983: EMDB EMDataResource

Classification: TRANSFERASE/INHIBITOR
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-11-20 Released: 2026-09-09
Deposition Author(s): Ferens, F.G., Tsantrizos, Y.S., Lemieux, M.J.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada), Canadian Institutes of Health Research (CIHR)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9ZBD

This is version 1.1 of the entry. See complete history.

Literature

Structural and Functional Analysis of GGPPS Inhibition as a Therapeutic Mechanism for Acute Myeloid Leukemia

Ferens, F.G., Waller, D.D., Boutin, R., Lee, H.F., Tremblay, M., Saba-El-Leil, M.K., Guan, T.L., Skorey, K., Grignano, E., Sebag, M., Wiita, A.P., Lemieux, M.J., Tsantrizos, Y.S.

(2026) J Med Chem 69: 21862-21878

DOI: https://doi.org/10.1021/acs.jmedchem.6c00808

Macromolecule Content

Total Structure Weight: 209.84 kDa
Atom Count: 13,686
Modeled Residue Count: 1,674
Deposited Residue Count: 1,806
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Geranylgeranyl pyrophosphate synthase	A, B, C, D, E A, B, C, D, E, F	301	Homo sapiens	Mutation(s): 0 Gene Names: GGPS1 EC: 2.5.1 (PDB Primary Data), 2.5.1.1 (PDB Primary Data), 2.5.1.29 (PDB Primary Data), 2.5.1.10 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for O95749 (Homo sapiens) Explore O95749 Go to UniProtKB: O95749
PHAROS: O95749 GTEx: ENSG00000152904
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O95749
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	2.0_5729
RECONSTRUCTION	cryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-09-09

Deposition Author(s):

Tsantrizos, Y.S.

Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	RGPIN-2023-04396
Canadian Institutes of Health Research (CIHR)	Canada	PJT-159743

Revision History (Full details and data files)

Version 1.0: 2026-09-09
Type: Initial release
Version 1.1: 2026-10-21
Changes: Data collection, Database references