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 9ZXX | pdb_00009zxx

Ca2+ bound destabilized open state Connexin-46


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9ZXX

This is version 1.0 of the entry. See complete history. 

Literature

Calcium induced N-terminal gating and pore collapse in connexin-46/50 gap junctions

Flores, J.A., O'Neill, S.E., Jarodsky, J.M., Haddad, B.G., Reichow, S.L.

(2026) Nat Commun 

Macromolecule Content 

  • Total Structure Weight: 657.78 kDa 
  • Atom Count: 20,772 
  • Modeled Residue Count: 2,280 
  • Deposited Residue Count: 4,956 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gap junction alpha-3 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
413Ovis ariesMutation(s): 1 
UniProt
Find proteins for Q9TU17 (Ovis aries)
Explore Q9TU17 
Go to UniProtKB:  Q9TU17
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9TU17
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MC3

Query on MC3



Download:Ideal Coordinates CCD File
AA [auth A]
AB [auth C]
AC [auth D]
AD [auth F]
AE [auth G]
AA [auth A],
AB [auth C],
AC [auth D],
AD [auth F],
AE [auth G],
AF [auth I],
AH [auth L],
BA [auth A],
BB [auth C],
BC [auth D],
BE [auth G],
BF [auth I],
BG [auth K],
BH [auth L],
CA [auth A],
CB [auth C],
CD [auth F],
CF [auth I],
CG [auth K],
CH [auth L],
DA [auth A],
DB [auth C],
DC [auth E],
DD [auth F],
DE [auth H],
DF [auth I],
DG [auth K],
DH [auth L],
EB [auth C],
EC [auth E],
ED [auth F],
EE [auth H],
EF [auth I],
EG [auth K],
EH [auth L],
FA [auth B],
FB [auth C],
FC [auth E],
FD [auth F],
FE [auth H],
FF [auth I],
FG [auth K],
FH [auth L],
GA [auth B],
GB [auth C],
GC [auth E],
GD [auth F],
GE [auth H],
GF [auth I],
GG [auth K],
GH [auth L],
HA [auth B],
HB [auth C],
HC [auth E],
HD [auth F],
HE [auth H],
HF [auth I],
HG [auth K],
HH [auth L],
IA [auth B],
IB [auth C],
IC [auth E],
ID [auth F],
IE [auth H],
IF [auth I],
IG [auth K],
JA [auth B],
JB [auth C],
JC [auth E],
JD [auth F],
JE [auth H],
JG [auth K],
KA [auth B],
KB [auth C],
KC [auth E],
KE [auth H],
KF [auth J],
KG [auth K],
LA [auth B],
LC [auth E],
LD [auth G],
LE [auth H],
LF [auth J],
LG [auth K],
MA [auth B],
MB [auth D],
MC [auth E],
MD [auth G],
ME [auth H],
MF [auth J],
MG [auth K],
N [auth A],
NA [auth B],
NB [auth D],
NC [auth E],
ND [auth G],
NE [auth H],
NF [auth J],
NG [auth K],
O [auth A],
OA [auth B],
OB [auth D],
OC [auth E],
OD [auth G],
OE [auth H],
OF [auth J],
OG [auth K],
P [auth A],
PA [auth B],
PB [auth D],
PC [auth E],
PD [auth G],
PE [auth H],
PF [auth J],
PG [auth K],
Q [auth A],
QA [auth B],
QB [auth D],
QC [auth E],
QD [auth G],
QE [auth H],
QF [auth J],
QG [auth K],
R [auth A],
RA [auth B],
RB [auth D],
RC [auth E],
RD [auth G],
RE [auth H],
RF [auth J],
RG [auth L],
S [auth A],
SA [auth B],
SB [auth D],
SC [auth E],
SD [auth G],
SF [auth J],
SG [auth L],
T [auth A],
TA [auth B],
TB [auth D],
TC [auth F],
TD [auth G],
TE [auth I],
TF [auth J],
TG [auth L],
U [auth A],
UB [auth D],
UC [auth F],
UD [auth G],
UE [auth I],
UF [auth J],
UG [auth L],
V [auth A],
VA [auth C],
VB [auth D],
VC [auth F],
VD [auth G],
VE [auth I],
VF [auth J],
VG [auth L],
W [auth A],
WA [auth C],
WB [auth D],
WC [auth F],
WD [auth G],
WE [auth I],
WF [auth J],
WG [auth L],
X [auth A],
XA [auth C],
XB [auth D],
XC [auth F],
XD [auth G],
XE [auth I],
XF [auth J],
XG [auth L],
Y [auth A],
YA [auth C],
YB [auth D],
YC [auth F],
YD [auth G],
YE [auth I],
YF [auth J],
YG [auth L],
Z [auth A],
ZA [auth C],
ZB [auth D],
ZC [auth F],
ZD [auth G],
ZE [auth I],
ZF [auth J]
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
C36 H72 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-N
CA

Query on CA



Download:Ideal Coordinates CCD File
AG [auth K]
BD [auth F]
CC [auth E]
CE [auth H]
EA [auth B]
AG [auth K],
BD [auth F],
CC [auth E],
CE [auth H],
EA [auth B],
JF [auth J],
KD [auth G],
LB [auth D],
M [auth A],
SE [auth I],
UA [auth C],
ZG [auth L]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR35GM124779
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesF31EY030409

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release