AF_AFD4G3R4F1

COMPUTED STRUCTURE MODEL OF TRNA(GLU)-SPECIFIC NUCLEASE WAPA

There are no experimental data to verify the accuracy of this computed structure model. See Model Confidence metrics below for all regions of the polypeptide chain

• AlphaFold DB: D4G3R4
• Released in AlphaFold DB:  2021-12-09
  Last Modified in AlphaFold DB: 2025-08-01
• Organism(s): Bacillus subtilis subsp. natto BEST195
• UniProtKB: D4G3R4

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Model Confidence 

• pLDDT (global): 82.26
• pLDDT (local):

Model Confidence 

•   Very high (pLDDT > 90)    
•   Confident (70 < pLDDT ≤ 90)    
•   Low (50 < pLDDT ≤ 70)    
•   Very low (pLDDT ≤ 50)    

Computed Structure Models provide per-residue confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be unstructured in isolation.

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Macromolecule Content 

• Total Structure Weight: 261.44 kDa 
• Atom Count: 18,453 
• Modeled Residue Count: 2,347 
• Deposited Residue Count: 2,347 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
tRNA(Glu)-specific nuclease WapA	A	2,347	Bacillus subtilis subsp. natto BEST195	Mutation(s): 0  Gene Names: wapA EC: 3.1
UniProt
Find proteins for D4G3R4 (Bacillus subtilis subsp. natto (strain BEST195)) Explore D4G3R4  Go to UniProtKB:  D4G3R4