AF_AFQ3IMF3F1

COMPUTED STRUCTURE MODEL OF PROBABLE TRNA PSEUDOURIDINE SYNTHASE D

There are no experimental data to verify the accuracy of this computed structure model. See Model Confidence metrics below for all regions of the polypeptide chain

• AlphaFold DB: Q3IMF3
• Released in AlphaFold DB:  2021-12-09
  Last Modified in AlphaFold DB: 2025-08-01
• Organism(s): Natronomonas pharaonis DSM 2160
• UniProtKB: Q3IMF3

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Model Confidence 

• pLDDT (global): 94.4
• pLDDT (local):

Model Confidence 

•   Very high (pLDDT > 90)    
•   Confident (70 < pLDDT ≤ 90)    
•   Low (50 < pLDDT ≤ 70)    
•   Very low (pLDDT ≤ 50)    

Computed Structure Models provide per-residue confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be unstructured in isolation.

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Macromolecule Content 

• Total Structure Weight: 47.96 kDa 
• Atom Count: 3,378 
• Modeled Residue Count: 435 
• Deposited Residue Count: 435 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable tRNA pseudouridine synthase D	A	435	Natronomonas pharaonis DSM 2160	Mutation(s): 0  Gene Names: truD EC: 5.4.99.27
UniProt
Find proteins for Q3IMF3 (Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)) Explore Q3IMF3  Go to UniProtKB:  Q3IMF3