Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1vk5a_ All alpha proteins Hypothetical protein At3g22680 Hypothetical protein At3g22680 Hypothetical protein At3g22680 Hypothetical protein At3g22680 thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyHypothetical protein At3g22680 8028986 4002573 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHypothetical protein At3g22680 8041365 3001432 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARdDM_RDM1e1vk5A1 A: alpha arraysX: Hypothetical protein At3g22680 (From Topology)H: Hypothetical protein At3g22680 (From Topology)T: Hypothetical protein At3g22680F: RdDM_RDM1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.120.690 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) RDM1 protein domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09187RNA-directed DNA methylation 1 (RdDM_RDM1)RNA-directed DNA methylation 1This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation [1]. As ...This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation [1]. As part of the DDR complex with two other RdDM components, it has been shown to facilitate association of PolV to chromatin [2,3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
expressed protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR015270Protein RDM1, plantFamily
IPR036319RDM1 superfamilyHomologous Superfamily