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X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 protein (10 mg/ml), Ammonium Sulfate (0.8M), Hepes (0.1M), Magnesium Sulfate (0.04M), CHAPS (0.41%), pH 8.5, Vapor diffusion, hanging drop, temperature 293K 2 VAPOR DIFFUSION, HANGING DROP 8.5 293 protein (5 mg/ml), Ammonium Sulfate (0.8M), Hepes (0.1M), Magnesium Sulfate (0.04M), CHAPS (0.41%), pH 8.5, Vapor diffusion, hanging drop, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.45 α = 90 b = 83.45 β = 90 c = 60.575 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Bent cylindrical Si-mirror (Rh coating) 2004-02-14 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MAR CCD 165 mm Rh Mirror 2004-02-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.9790 APS 14-BM-D 2 SYNCHROTRON APS BEAMLINE 32-ID 0.96408, 0.97916, 0.97931 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 50 99.2 0.037 38.61 10.9 32231
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.66 92.2 0.302 9.3 10.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.604 34.3 30570 1633 99.99 0.161 0.16102 0.1599 0.1606 0.1835 0.1867 RANDOM 23.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.359 r_dihedral_angle_1_deg 4.689 r_scbond_it 3.626 r_mcangle_it 2.821 r_angle_refined_deg 1.646 r_mcbond_it 1.495 r_nbtor_refined 0.321 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.212 r_xyhbond_nbd_refined 0.202
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.359 r_dihedral_angle_1_deg 4.689 r_scbond_it 3.626 r_mcangle_it 2.821 r_angle_refined_deg 1.646 r_mcbond_it 1.495 r_nbtor_refined 0.321 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.212 r_xyhbond_nbd_refined 0.202 r_symmetry_hbond_refined 0.144 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1003 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 63
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing ARP/wARP model building REFMAC refinement PDB_EXTRACT data extraction