Crystal structure of Chlamydomonas reinhardtii Rubisco with a large- subunit supressor mutation T342I
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| P | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| P | Propep_M14 | e2v67P1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| O | Propep_M14 | e2v67O1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| N | Propep_M14 | e2v67N1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| M | Propep_M14 | e2v67M1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| L | Propep_M14 | e2v67L1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| K | Propep_M14 | e2v67K1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| J | Propep_M14 | e2v67J1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| I | Propep_M14 | e2v67I1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Propep_M14 | ECOD (v295.2) |
| H | Fer4,DUF3470 | e2v67H1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| H | NAD_binding_3 | e2v67H2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| G | Fer4,DUF3470 | e2v67G1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| G | NAD_binding_3 | e2v67G2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| F | Fer4,DUF3470 | e2v67F1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| F | NAD_binding_3 | e2v67F2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| E | Fer4,DUF3470 | e2v67E1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| E | NAD_binding_3 | e2v67E2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| D | Fer4,DUF3470 | e2v67D1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| D | NAD_binding_3 | e2v67D2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| C | Fer4,DUF3470 | e2v67C1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| C | NAD_binding_3 | e2v67C2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| B | Fer4,DUF3470 | e2v67B1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| B | NAD_binding_3 | e2v67B2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
| A | Fer4,DUF3470 | e2v67A1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Fer4,DUF3470 | ECOD (v295.2) |
| A | NAD_binding_3 | e2v67A2 | A: alpha arrays | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: NAD_binding_3 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | Domain | ||
| PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
| PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 | ||||
| RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| MME | Parent Component: MET :  AA0064 :  N-methyl-L-methionine MOD:00073 | |
| HYP | Parent Component: PRO :  AA0064 , AA0030 :  N-methyl-L-methionine MOD:00073 , 4-hydroxy-L-proline MOD:00039 | |
| KCX | Parent Component: LYS :  AA0064 , AA0030 | |
| SMC | Parent Component: CYS :  AA0064 , AA0030 , AA0234 :  N-methyl-L-methionine MOD:00073 , 4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 | |














