2V6A
Crystal structure of Chlamydomonas reinhardtii Rubisco with large- subunit mutations V331A, G344S
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | RuBisCO_large_N | e2v6aD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
D | RuBisCO_large | e2v6aD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
E | RuBisCO_large_N | e2v6aE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
E | RuBisCO_large | e2v6aE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
F | RuBisCO_large_N | e2v6aF1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
F | RuBisCO_large | e2v6aF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
G | RuBisCO_large_N | e2v6aG1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
G | RuBisCO_large | e2v6aG2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
H | RuBisCO_large_N | e2v6aH1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
H | RuBisCO_large | e2v6aH2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
A | RuBisCO_large_N | e2v6aA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e2v6aA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
B | RuBisCO_large_N | e2v6aB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
B | RuBisCO_large | e2v6aB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
C | RuBisCO_large_N | e2v6aC1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
C | RuBisCO_large | e2v6aC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
I | RuBisCO_small | e2v6aI1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
J | RuBisCO_small | e2v6aJ1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
K | RuBisCO_small | e2v6aK1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
N | RuBisCO_small | e2v6aN1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
O | RuBisCO_small | e2v6aO1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
P | RuBisCO_small | e2v6aP1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
L | RuBisCO_small | e2v6aL1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
M | RuBisCO_small | e2v6aM1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN | ||||
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
HYP | Parent Component: PRO :  AA0030 :  4-hydroxy-L-proline MOD:00039 | |
KCX | Parent Component: LYS :  AA0030 | |
SMC | Parent Component: CYS :  AA0030 , AA0234 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 | |
MME | Parent Component: MET :  AA0030 , AA0234 , AA0064 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 , N-methyl-L-methionine MOD:00073 |