Crystal structure of alpha5beta1 integrin headpiece in complex with RGD peptide
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth F] | FtsJ | e3vi4F1 | A: alpha arrays | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: FtsJ | ECOD (v295.2) |
| F [auth H] | FtsJ | e3vi4H1 | A: alpha arrays | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: FtsJ | ECOD (v295.2) |
| G [auth E] | 14-3-3 | e3vi4E1 | A: alpha arrays | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: 14-3-3 | ECOD (v295.2) |
| E [auth L] | 14-3-3 | e3vi4L1 | A: alpha arrays | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: 14-3-3 | ECOD (v295.2) |
| D | Sua5_yciO_yrdC | e3vi4D1 | A: alpha arrays | X: MHC antigen-recognition domain | H: MHC antigen-recognition domain | T: MHC antigen-recognition domain | F: Sua5_yciO_yrdC | ECOD (v295.2) |
| B | Sua5_yciO_yrdC | e3vi4B1 | A: alpha arrays | X: MHC antigen-recognition domain | H: MHC antigen-recognition domain | T: MHC antigen-recognition domain | F: Sua5_yciO_yrdC | ECOD (v295.2) |
| C | NADHdh | e3vi4C1 | A: alpha arrays | X: SSHS domain | H: Class II aaRS and biotin synthetases | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: NADHdh | ECOD (v295.2) |
| A | NADHdh | e3vi4A1 | A: alpha arrays | X: SSHS domain | H: Class II aaRS and biotin synthetases | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: NADHdh | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| F [auth H], H [auth F] | SG/19 Fab fragment | VH-CH1 | Mus musculus (house mouse) | IGHV1-9*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202635-0) |
| E [auth L], G [auth E] | SG/19 Fab fragment | L-KAPPA | Mus musculus (house mouse) | IGKV2-137*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202635-0) |
| Integrin | INTEGRIN-BETA-1 | Homo sapiens (human) | BETA-1 | P-LIKE-DOMAIN PSI, Y-LIKE-DOMAIN Hybrid-1, B-LIKE-DOMAIN BETA-1, Y-LIKE-DOMAIN Hybrid-2 | RPI | INTEGRIN-ALPHA-5_BETA-1 | IMGT (202635-0) | |
| Integrin | INTEGRIN-ALPHA-5 | Homo sapiens (human) | ALPHA-5 | BP-LIKE-DOMAIN B-Propeller, F1-LIKE-DOMAIN Thigh | RPI | INTEGRIN-ALPHA-5_BETA-1 | IMGT (202635-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| F [auth H], H [auth F] | Heavy Chain | IGHV1 | - | integrin beta-1 | SAbDab (2026-09-11) |
| E [auth L], G [auth E] | Light Chain | IGKV2 | Kappa | integrin beta-1 | SAbDab (2026-09-11) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF17205 | Integrin plexin domain (PSI_integrin) | Integrin plexin domain | This short disulphide rich domain is found at the N-terminus of integrin beta chains. | Domain | |
| PF00362 | Integrin beta chain VWA domain (Integrin_beta) | Integrin beta chain VWA domain | Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. | Domain | |
| PF01839 | FG-GAP repeat (FG-GAP) | FG-GAP repeat | - | Repeat | |
| PF08441 | Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1) | Integrin alpha Ig-like domain 1 | This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. | Domain |














