NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 3VI4 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3VI4_NAG_B_503Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3VI4_NAG_B_503Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3VI4_NAG_B_503Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3VI4_NAG_B_503 84% 58% 0.072 0.9320.58 1 - 100100%1
3VI4_NAG_A_2005 68% 58% 0.086 0.8950.48 1.1 - 100100%1
3VI4_NAG_B_504 60% 61% 0.099 0.8840.47 1.02 - 100100%1
3VI4_NAG_C_2009 55% 52% 0.092 0.8580.54 1.28 - 100100%1
3VI4_NAG_A_2007 53% 65% 0.103 0.8610.5 0.83 - -00100%1
3VI4_NAG_C_2016 43% 52% 0.107 0.8290.45 1.39 - 110100%1
3VI4_NAG_C_2008 39% 61% 0.13 0.8360.54 0.95 - 100100%1
3VI4_NAG_C_2007 37% 64% 0.111 0.8060.53 0.85 - 100100%1
3VI4_NAG_D_503 36% 40% 0.096 0.7870.37 1.93 - 200100%1
3VI4_NAG_A_2016 34% 33% 0.118 0.8010.51 2.09 - 100100%1
3VI4_NAG_A_2006 13% 57% 0.136 0.6750.58 1.07 - 100100%1
3VI3_NAG_B_2004 83% 55% 0.078 0.9340.54 1.2 - 100100%1
7CEB_NAG_B_1004 59% 76% 0.165 0.9460.37 0.57 - -00100%1
4WK2_NAG_A_520 29% 77% 0.223 0.8820.29 0.61 - -00100%1
8W30_NAG_B_504 24% 75% 0.139 0.7650.48 0.49 - -00100%1
4WJK_NAG_B_512 14% 57% 0.197 0.7431.02 0.65 1 -00100%1
3H0C_NAG_A_794 100% 56% 0.021 0.9950.61 1.08 - 100100%1
5F9W_NAG_A_510 100% 88% 0.023 0.9940.24 0.43 - -00100%1
5LDS_NAG_B_1007 100% 67% 0.022 0.9950.48 0.79 - -00100%1
5O5D_NAG_A_601 100% 65% 0.022 0.9940.32 0.99 - 100100%1
6MUG_NAG_G_629 100% 76% 0.022 0.9940.35 0.58 - -00100%1