CRYSTAL STRUCTURE OF ARC N-LOBE COMPLEXED WITH STARGAZIN PEPTIDE


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AV-sete4x3hA1 A: beta barrelsX: OB-foldH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: V-setECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21395Activity-regulated cytoskeleton-associated protein, N-lobe (Arc_N-lobe)Activity-regulated cytoskeleton-associated protein, N-lobeThis domain is found in Activity-regulated cytoskeleton-associated protein from humans (Arc), a master regulator of synaptic plasticity that promotes endocytosis of AMPA receptors and a postsynaptic mediator of activity-dependent synapse elimination ...This domain is found in Activity-regulated cytoskeleton-associated protein from humans (Arc), a master regulator of synaptic plasticity that promotes endocytosis of AMPA receptors and a postsynaptic mediator of activity-dependent synapse elimination in the developing cerebellum. This protein is associated with cognitive diseases. This protein has a bi-lobar architecture that is similar to the capsid domain of HIV gag protein consisting of a N-lobe, represented in this entry, and a C-lobe (Pfam:PF18162), which have four and five alpha-helices, connected by a short non-helical segment [1-3]. This protein was originated from the Ty3/Gypsy retrotransposon family and domesticated in higher vertebrates for synaptic functions [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-2 SUBUNIT
Activity-regulated cytoskeleton-associated protein