4ZJM | pdb_00004zjm

Crystal Structure of Mycobacterium tuberculosis LpqH (Rv3763)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	LpqH-like	8093056	3002669	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	LpqH-like	8093056	3002669	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	LpqH-like	8093056	3002669	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	LpqH-like	8093056	3002669	SCOP2B (2022-06-29)
C	SCOP2 Family	LpqH-like	8047266	4005537	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	LpqH-like	8093056	3002669	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	LpqH-like	8093056	3002669	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	LpqH-like	8093056	3002669	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Ribosomal_S17,Ribosomal_S17_N	e4zjmG1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
F	Ribosomal_S17,Ribosomal_S17_N	e4zjmF1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
E	Ribosomal_S17,Ribosomal_S17_N	e4zjmE1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
D	Ribosomal_S17,Ribosomal_S17_N	e4zjmD1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
C	Ribosomal_S17,Ribosomal_S17_N	e4zjmC1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
B	Ribosomal_S17,Ribosomal_S17_N	e4zjmB1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
A	Ribosomal_S17,Ribosomal_S17_N	e4zjmA1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F	PF05481	Mycobacterium 19 kDa lipoprotein antigen (Myco_19_kDa)	Mycobacterium 19 kDa lipoprotein antigen	Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by ...	Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes [1,2].	Domain
B	PF05481	Mycobacterium 19 kDa lipoprotein antigen (Myco_19_kDa)	Mycobacterium 19 kDa lipoprotein antigen	Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by ...	Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
F	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
E	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
D	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
C	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
B	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
A	Lipoprotein LpqH	host cell surface binding binding host cell surface receptor binding	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction defense response to bacterium response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell surface cellular anatomical structure cell periphery plasma membrane membrane membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle bacterial extracellular vesicle vesicle extracellular membrane-bounded organelle external encapsulating structure cell wall peptidoglycan-based cell wall host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G	IPR008691	19kDa lipoprotein antigen	Family
F	IPR008691	19kDa lipoprotein antigen	Family
E	IPR008691	19kDa lipoprotein antigen	Family
D	IPR008691	19kDa lipoprotein antigen	Family
C	IPR008691	19kDa lipoprotein antigen	Family
B	IPR008691	19kDa lipoprotein antigen	Family
A	IPR008691	19kDa lipoprotein antigen	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G	MLY	Parent Component: LYS : AA0075 : N6,N6-dimethyl-L-lysine MOD:00084
F	MLY	Parent Component: LYS : AA0075 , AA0075 : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084
E	MLY	Parent Component: LYS : AA0075 , AA0075 , AA0075 : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084
D	MLY	Parent Component: LYS : AA0075 , AA0075 , AA0075 , AA0075 : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084
C	MLY	Parent Component: LYS : AA0075 , AA0075 , AA0075 , AA0075 , AA0075 : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084
B	MLY	Parent Component: LYS : AA0075 , AA0075 , AA0075 , AA0075 , AA0075 , AA0075 : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084
A	MLY	Parent Component: LYS : AA0075 , AA0075 , AA0075 , AA0075 , AA0075 , AA0075 , AA0075 : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.