5GJQ
Structure of the human 26S proteasome bound to USP14-UbAl
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth a] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079175 | 3000131 | SCOP2B (2022-06-29) |
CA [auth o] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079175 | 3000131 | SCOP2B (2022-06-29) |
J [auth F] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064022 | 3000131 | SCOP2B (2022-06-29) |
W [auth l] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064022 | 3000131 | SCOP2B (2022-06-29) |
L [auth G] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064060 | 3000131 | SCOP2B (2022-06-29) |
Y [auth m] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064060 | 3000131 | SCOP2B (2022-06-29) |
AA [auth n] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064054 | 3000131 | SCOP2B (2022-06-29) |
RA [auth X] | SCOP2 Family | Proteasome subunits | 8064053 | 4002254 | SCOP2 (2022-06-29) |
RA [auth X] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8064054 | 3000131 | SCOP2 (2022-06-29) |
FA [auth Q] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8067905 | 3000034 | SCOP2B (2022-06-29) |
HA [auth R] | SCOP2B Superfamily | TPR-like | 8057045 | 3001345 | SCOP2B (2022-06-29) |
HA [auth R] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8057047 | 3000034 | SCOP2B (2022-06-29) |
NA [auth U] | SCOP2 Family | EIF3 subunit F C-terminal domain-like | 8048099 | 4005957 | SCOP2 (2022-06-29) |
NA [auth U] | SCOP2 Family | JAB1/Mov34/MPN/PAD-1/JAMM domain-like | 8053250 | 4006292 | SCOP2 (2022-06-29) |
NA [auth U] | SCOP2 Superfamily | EIF3 subunit F C-terminal domain-like | 8053251 | 3002167 | SCOP2 (2022-06-29) |
NA [auth U] | SCOP2 Superfamily | JAB1/MPN domain-like | 8053252 | 3001105 | SCOP2 (2022-06-29) |
PA [auth V] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053255 | 3001105 | SCOP2B (2022-06-29) |
PA [auth V] | SCOP2B Superfamily | EIF3 subunit F C-terminal domain-like | 8053254 | 3002167 | SCOP2B (2022-06-29) |
C [auth b] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064074 | 3000131 | SCOP2B (2022-06-29) |
EA [auth p] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064074 | 3000131 | SCOP2B (2022-06-29) |
SA [auth Y] | SCOP2B Superfamily | DSS1/SEM1 protein family | 8053396 | 3002183 | SCOP2B (2022-06-29) |
UA [auth x] | SCOP2B Superfamily | Cysteine proteinases | 8037489 | 3001808 | SCOP2B (2022-06-29) |
VA [auth y] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064014 | 3000131 | SCOP2B (2022-06-29) |
Q [auth i] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064014 | 3000131 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064036 | 3000131 | SCOP2B (2022-06-29) |
S [auth j] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064036 | 3000131 | SCOP2B (2022-06-29) |
H [auth E] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064004 | 3000131 | SCOP2B (2022-06-29) |
U [auth k] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064004 | 3000131 | SCOP2B (2022-06-29) |
I [auth e] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079492 | 3000131 | SCOP2B (2022-06-29) |
KA [auth s] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079492 | 3000131 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth a] | Proteasome | e5gjqa1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
CA [auth o] | Proteasome | e5gjqo1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
J [auth F] | Proteasome | e5gjqF1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
W [auth l] | Proteasome | e5gjql1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
K [auth f] | Proteasome | e5gjqf1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
MA [auth t] | Proteasome | e5gjqt1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
L [auth G] | Proteasome | e5gjqG1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
Y [auth m] | Proteasome | e5gjqm1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
M [auth g] | Proteasome | e5gjqg1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
OA [auth u] | Proteasome | e5gjqu1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
N [auth H] | PRK03992 | e5gjqH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
N [auth H] | Sigma54_activat | e5gjqH3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
P [auth I] | 26Sp45 | e5gjqI1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: 26Sp45 | ECOD (1.6) |
P [auth I] | KOG0652_2nd | e5gjqI3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0652_2nd | ECOD (1.6) |
P [auth I] | Sigma54_activat | e5gjqI2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
R [auth J] | 26Sp45 | e5gjqJ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: 26Sp45 | ECOD (1.6) |
R [auth J] | KOG0652_2nd | e5gjqJ2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0652_2nd | ECOD (1.6) |
R [auth J] | Sigma54_activat | e5gjqJ3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
T [auth K] | 26Sp45 | e5gjqK1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: 26Sp45 | ECOD (1.6) |
T [auth K] | PRK03992 | e5gjqK2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
T [auth K] | Sigma54_activat | e5gjqK3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
V [auth L] | 26Sp45 | e5gjqL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: 26Sp45 | ECOD (1.6) |
V [auth L] | KOG0652_2nd | e5gjqL2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0652_2nd | ECOD (1.6) |
V [auth L] | Sigma54_activat | e5gjqL3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
X [auth M] | KOG0652_1st | e5gjqM2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: KOG0652_1st | ECOD (1.6) |
X [auth M] | KOG0652_3rd | e5gjqM4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0652_3rd | ECOD (1.6) |
X [auth M] | KOG0652_2nd | e5gjqM3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0652_2nd | ECOD (1.6) |
X [auth M] | Sigma54_activat | e5gjqM1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
B | Proteasome | e5gjqB1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
O [auth h] | Proteasome | e5gjqh1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
Z [auth N] | KOG2062_2nd | e5gjqN2 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: KOG2062_2nd | ECOD (1.6) |
Z [auth N] | KOG2062_1st | e5gjqN1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: 26S proteasome subunit Rpn2 N-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 N-terminal domain | F: KOG2062_1st | ECOD (1.6) |
Z [auth N] | HEAT_2_3 | e5gjqN3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: HEAT_2_3 | ECOD (1.6) |
AA [auth n] | Proteasome | e5gjqn1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
RA [auth X] | Proteasome | e5gjqX1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
BA [auth O] | PCI_1 | e5gjqO2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI_1 | ECOD (1.6) |
BA [auth O] | KOG2908_N | e5gjqO3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2908_N | ECOD (1.6) |
BA [auth O] | KOG2908_C | e5gjqO1 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN9 C-terminal helix | F: KOG2908_C | ECOD (1.6) |
DA [auth P] | PCI | e5gjqP1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
DA [auth P] | RPN7_1 | e5gjqP3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RPN7_1 | ECOD (1.6) |
DA [auth P] | KOG1498 | e5gjqP2 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN5 C-terminal helix | F: KOG1498 | ECOD (1.6) |
FA [auth Q] | PCI | e5gjqQ3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
FA [auth Q] | KOG1463 | e5gjqQ2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1463 | ECOD (1.6) |
FA [auth Q] | RPN6_like | e5gjqQ1 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN6 C-termial helix (From Topology) | T: 26S proteasome regulatory subunit RPN6 C-termial helix | F: RPN6_like | ECOD (1.6) |
HA [auth R] | PCI_1 | e5gjqR3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI_1 | ECOD (1.6) |
HA [auth R] | RPN7 | e5gjqR1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RPN7 | ECOD (1.6) |
HA [auth R] | KOG0687 | e5gjqR2 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN7 C-terminal helix | F: KOG0687 | ECOD (1.6) |
LA [auth T] | CSN8_PSD8_EIF3K_C_2 | e5gjqT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CSN8_PSD8_EIF3K_C_2 | ECOD (1.6) |
LA [auth T] | SAC3_GANP_1st | e5gjqT2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SAC3_GANP_1st | ECOD (1.6) |
NA [auth U] | JAB | e5gjqU2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB | ECOD (1.6) |
NA [auth U] | MitMem_reg | e5gjqU3 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: MitMem_reg | ECOD (1.6) |
PA [auth V] | JAB | e5gjqV1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB | ECOD (1.6) |
PA [auth V] | EUF08560 | e5gjqV2 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: EUF08560 | ECOD (1.6) |
C [auth b] | Proteasome | e5gjqb1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
EA [auth p] | Proteasome | e5gjqp1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
QA [auth W] | VWA | e5gjqW1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: VWA | ECOD (1.6) |
TA [auth Z] | KOG2005_1st | e5gjqZ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: 26S proteasome subunit Rpn2 N-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 N-terminal domain | F: KOG2005_1st | ECOD (1.6) |
TA [auth Z] | KOG1858_2nd | e5gjqZ3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: KOG1858_2nd | ECOD (1.6) |
UA [auth x] | UCH | e5gjqx1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: UCH | ECOD (1.6) |
VA [auth y] | ubiquitin_1 | e5gjqy1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
D [auth C] | Proteasome | e5gjqC1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
Q [auth i] | Proteasome | e5gjqi1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
E [auth c] | Proteasome | e5gjqc1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
GA [auth q] | Proteasome | e5gjqq1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
F [auth D] | Proteasome | e5gjqD1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
S [auth j] | Proteasome | e5gjqj1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
G [auth d] | Proteasome | e5gjqd1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
IA [auth r] | Proteasome | e5gjqr1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
H [auth E] | Proteasome | e5gjqE1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
U [auth k] | Proteasome | e5gjqk1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
I [auth e] | Proteasome | e5gjqe1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
KA [auth s] | Proteasome | e5gjqs1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: Proteasome | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
J [auth F], W [auth l] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
J [auth F], W [auth l] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
L [auth G], Y [auth m] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
L [auth G], Y [auth m] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
N [auth H] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
N [auth H] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
N [auth H] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
N [auth H] | PF21236 | 26S proteasome regulatory subunit 7, OB domain (PRS7_OB) | 26S proteasome regulatory subunit 7, OB domain | This is the OB domain from 26S proteasome regulatory subunit 7 (PRS7, also known as PSMC2, Rpt1 or MSS1), a component of the 19S proteasome cap [1-5]. These are one of six ATPases of the regulatory particle that form a heterohexameric ring. This doma ... | Domain |
N [auth H] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
P [auth I] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
P [auth I] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
P [auth I] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
P [auth I] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
P [auth I] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
R [auth J] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
R [auth J] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
R [auth J] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
R [auth J] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
R [auth J] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
T [auth K] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
T [auth K] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
T [auth K] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
T [auth K] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
T [auth K] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
V [auth L] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
V [auth L] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
V [auth L] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
V [auth L] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
V [auth L] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
X [auth M] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
X [auth M] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
X [auth M] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
X [auth M] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
X [auth M] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
B, O [auth h] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
B, O [auth h] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
B, O [auth h] | PF12465 | Proteasome beta subunits C terminal (Pr_beta_C) | Proteasome beta subunits C terminal | - | Family |
Z [auth N] | PF13646 | HEAT repeats (HEAT_2) | HEAT repeats | - | Repeat |
Z [auth N] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
Z [auth N] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
Z [auth N] | PF18004 | 26S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C) | 26S proteasome regulatory subunit RPN2 C-terminal domain | This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ... | Domain |
Z [auth N] | PF21505 | 26S proteasome subunit RPN2, N-terminal domain (RPN2_N) | 26S proteasome subunit RPN2, N-terminal domain | This entry represents the N-terminal helical domain of 26S proteasome regulatory subunit RPN2 and 26S proteasome non-ATPase regulatory subunit 1 (PSMD1). It adopts a rod-like structure [1-5]. | Domain |
Z [auth N] | PF01851 | Proteasome/cyclosome repeat (PC_rep) | Proteasome/cyclosome repeat | - | Repeat |
AA [auth n], RA [auth X] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
AA [auth n], RA [auth X] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
AA [auth n], RA [auth X] | PF00443 | Ubiquitin carboxyl-terminal hydrolase (UCH) | Ubiquitin carboxyl-terminal hydrolase | - | Family |
BA [auth O] | PF22037 | PSD13 N-terminal repeats (PSD13_N) | PSD13 N-terminal repeats | - | Repeat |
BA [auth O] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
DA [auth P] | PF18098 | 26S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C) | 26S proteasome regulatory subunit RPN5 C-terminal domain | This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ... | Domain |
DA [auth P] | PF12465 | Proteasome beta subunits C terminal (Pr_beta_C) | Proteasome beta subunits C terminal | - | Family |
DA [auth P] | PF22241 | PSMD12/CSN4, N-terminal (PSMD12-CSN4_N) | PSMD12/CSN4, N-terminal | - | Repeat |
DA [auth P] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
FA [auth Q] | PF18055 | 26S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N) | 26S proteasome regulatory subunit RPN6 N-terminal domain | - | Repeat |
FA [auth Q] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
FA [auth Q] | PF18503 | 26S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix) | 26S proteasome subunit RPN6 C-terminal helix domain | This is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. | Domain |
FA [auth Q] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
HA [auth R] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
HA [auth R] | PF21154 | 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C) | 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix | RPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. | Domain |
HA [auth R] | PF10602 | 26S proteasome subunit RPN7 (RPN7) | 26S proteasome subunit RPN7 | - | Repeat |
HA [auth R] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
JA [auth S] | PF08375 | Proteasome regulatory subunit C-terminal (Rpn3_C) | Proteasome regulatory subunit C-terminal | - | Family |
JA [auth S] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
LA [auth T] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
LA [auth T] | PF10075 | CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K) | CSN8/PSMD8/EIF3K family | - | Family |
NA [auth U] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
NA [auth U] | PF13012 | Maintenance of mitochondrial structure and function (MitMem_reg) | Maintenance of mitochondrial structure and function | - | Family |
NA [auth U] | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB) | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | - | Family |
QA [auth W] | PF13519 | von Willebrand factor type A domain (VWA_2) | von Willebrand factor type A domain | - | Domain |
SA [auth Y] | PF05160 | DSS1/SEM1 family (DSS1_SEM1) | DSS1/SEM1 family | - | Family |
SA [auth Y] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
TA [auth Z] | PF01851 | Proteasome/cyclosome repeat (PC_rep) | Proteasome/cyclosome repeat | - | Repeat |
D [auth C], Q [auth i] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
D [auth C], Q [auth i] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
F [auth D], S [auth j] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
F [auth D], S [auth j] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
H [auth E], U [auth k] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
H [auth E], U [auth k] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |