Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
F [auth B]d5mz2b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
F [auth B]d5mz2b1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
G [auth E]d5mz2e2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
G [auth E]d5mz2e1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
Ad5mz2a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
Ad5mz2a1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
B [auth C]d5mz2c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
B [auth C]d5mz2c1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
C [auth H]d5mz2h2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
C [auth H]d5mz2h1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
D [auth F]d5mz2f2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
D [auth F]d5mz2f1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
E [auth D]d5mz2d2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
E [auth D]d5mz2d1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
H [auth G]d5mz2g2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
H [auth G]d5mz2g1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
Id5mz2i_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
J [auth O]d5mz2o_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
K [auth L]d5mz2l_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
L [auth N]d5mz2n_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
Md5mz2m_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
N [auth P]d5mz2p_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
O [auth J]d5mz2j_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)
P [auth K]d5mz2k_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira antarctica var. borealis ) [TaxId: 555753 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)
J [auth O]SCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)
L [auth N]SCOP2 FamilyRuBisCO, small subunit 8095088 4001455 SCOP2 (2022-06-29)
L [auth N]SCOP2 SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2 (2022-06-29)
MSCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)
O [auth J]SCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)
P [auth K]SCOP2B SuperfamilyRuBisCO, small subunit 8095089 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth B]RuBisCO_large_Ne5mz2B1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
F [auth B]RuBisCO_largee5mz2B2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
G [auth E]RuBisCO_large_Ne5mz2E2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
G [auth E]RuBisCO_largee5mz2E1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
ARuBisCO_large_Ne5mz2A2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee5mz2A1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
B [auth C]RuBisCO_large_Ne5mz2C2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
B [auth C]RuBisCO_largee5mz2C1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
C [auth H]RuBisCO_large_Ne5mz2H1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
C [auth H]RuBisCO_largee5mz2H2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
D [auth F]RuBisCO_large_Ne5mz2F1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
D [auth F]RuBisCO_largee5mz2F2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
E [auth D]RuBisCO_large_Ne5mz2D2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
E [auth D]RuBisCO_largee5mz2D1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
H [auth G]RuBisCO_large_Ne5mz2G2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
H [auth G]RuBisCO_largee5mz2G1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
IRuBisCO_smalle5mz2I1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
J [auth O]RuBisCO_smalle5mz2O1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
K [auth L]RuBisCO_smalle5mz2L1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
L [auth N]RuBisCO_smalle5mz2N1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
MRuBisCO_smalle5mz2M1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
N [auth P]RuBisCO_smalle5mz2P1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
O [auth J]RuBisCO_smalle5mz2J1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
P [auth K]RuBisCO_smalle5mz2K1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth B]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
F [auth B]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G [auth E]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G [auth E]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
B [auth C]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B [auth C]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C [auth H]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C [auth H]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
D [auth F]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
D [auth F]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E [auth D]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E [auth D]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
H [auth G]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
H [auth G]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J [auth O]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
K [auth L]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L [auth N]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
M3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N [auth P]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
O [auth J]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P [auth K]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Rubisco large subunit
Rubisco small subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain