5V12 | pdb_00005v12

Crystal structure of Carbon Sulfoxide lyase, Egt2 Y134F with sulfenic acid intermediate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth C]	Amino_oxidase	e5v12C1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
H [auth B]	Amino_oxidase	e5v12B1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
G [auth A]	Amino_oxidase	e5v12A1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
F [auth D]	Amino_oxidase	e5v12D1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
D [auth H]	Amino_oxidase	e5v12H1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
C [auth F]	Amino_oxidase	e5v12F1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
B [auth G]	Amino_oxidase	e5v12G1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)
A [auth E]	Amino_oxidase	e5v12E1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Amino_oxidase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth C]	PF00266	Aminotransferase class-V (Aminotran_5)	Aminotransferase class-V	This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.	Domain
A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], G [auth A], H [auth B]	PF00266	Aminotransferase class-V (Aminotran_5)	Aminotransferase class-V	This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth C]	Hercynylcysteine sulfoxide lyase	carbon-sulfur lyase activity lyase activity hercynylcysteine sulfoxide lyase activity (ergothioneine-forming) catalytic activity	amino-acid betaine biosynthetic process biosynthetic process selenoneine biosynthetic process modified histidine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process metabolic process cellular process amino-acid betaine metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], G [auth A], H [auth B]	Hercynylcysteine sulfoxide lyase	carbon-sulfur lyase activity lyase activity hercynylcysteine sulfoxide lyase activity (ergothioneine-forming) catalytic activity	amino-acid betaine biosynthetic process biosynthetic process selenoneine biosynthetic process modified histidine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process metabolic process cellular process amino-acid betaine metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth C]	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
E [auth C]	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
E [auth C]	IPR000192	Aminotransferase class V domain	Domain
A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], G [auth A], H [auth B]	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], G [auth A], H [auth B]	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], G [auth A], H [auth B]	IPR000192	Aminotransferase class V domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
E [auth C]	EXA	Parent Component: LYS
A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], A [auth E], B [auth G], C [auth F], D [auth H], F [auth D], G [auth A], H [auth B]	LLP	Parent Component: LYS RESID: AA0119 PSI-MOD : N6-pyridoxal phosphate-L-lysine MOD:00128

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.