Crystal structure of Rtt109-Asf1-H3-H4 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8036585 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyASF1-like 8067065 3002057 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
De5zbbD1 A: beta barrelsX: Surp module (SWAP domain)H: ADP-ribosylationT: ADP-ribosylationF:ECOD (v294.2)
Ce5zbbC1 A: beta barrelsX: Surp module (SWAP domain)H: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF:ECOD (v294.2)
Be5zbbB1 A: beta barrelsX: Surp module (SWAP domain)H: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF:ECOD (v294.2)
Ae5zbbA1 A: beta barrelsX: Surp module (SWAP domain)H: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF:ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D1.10.20.10 Mainly Alpha Orthogonal Bundle Histone, subunit A Histone, subunit ACATH (4.3.0)
C1.10.20.10 Mainly Alpha Orthogonal Bundle Histone, subunit A Histone, subunit ACATH (4.3.0)
B2.60.40.1490 Mainly Beta Sandwich Immunoglobulin-like Histone chaperone ASF1-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
PF04729ASF1 like histone chaperone (ASF1_hist_chap)ASF1 like histone chaperone- Family
PF08214Histone acetyltransferase KAT11-type domain (HAT_KAT11)Histone acetyltransferase KAT11-type domainThis entry represents a histone acetyltransferase catalytic domain found in fungal proteins, including RTT109 (also known as KAT11) from budding and fission yeasts and Candida species. This domain catalyses the acetylation of lysine residues on histo ...This entry represents a histone acetyltransferase catalytic domain found in fungal proteins, including RTT109 (also known as KAT11) from budding and fission yeasts and Candida species. This domain catalyses the acetylation of lysine residues on histone H3, including H3K56, H3K9, H3K14, H3K23 and H3K27 [1,2]. The domain functions within a complex with histone chaperones such as VPS75 that regulate substrate specificity [3]. Acetylation of H3K56 by this domain promotes nucleosome assembly, DNA repair and transcriptional regulation during S-phase [1,2]. The domain is also found in other histone acetyltransferases including p300/CBP which share a similar fold but differ in catalytic properties and cofactor requirements [3]. Members of this family show conservation across most eukaryotic fungi.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H4
Histone H3
Histone chaperone asf1
DNA damage response protein Rtt109, putative

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
ALY Parent Component: LYS

AA0055

:  N6-acetyl-L-lysine MOD:00064