5GJQ | pdb_00005gjq

Structure of the human 26S proteasome bound to USP14-UbAl

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KA [auth s]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079492 3000131 SCOP2B (2022-06-29)
I [auth e]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079492 3000131 SCOP2B (2022-06-29)
U [auth k]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064004 3000131 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064004 3000131 SCOP2B (2022-06-29)
S [auth j]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064036 3000131 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064036 3000131 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064014 3000131 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064014 3000131 SCOP2B (2022-06-29)
VA [auth y]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
UA [auth x]SCOP2B SuperfamilyCysteine proteinases 8037489 3001808 SCOP2B (2022-06-29)
SA [auth Y]SCOP2B SuperfamilyDSS1/SEM1 protein family 8053396 3002183 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064074 3000131 SCOP2B (2022-06-29)
C [auth b]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064074 3000131 SCOP2B (2022-06-29)
PA [auth V]SCOP2B SuperfamilyJAB1/MPN domain-like 8053255 3001105 SCOP2B (2022-06-29)
PA [auth V]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053254 3002167 SCOP2B (2022-06-29)
NA [auth U]SCOP2 FamilyEIF3 subunit F C-terminal domain-like 8048099 4005957 SCOP2 (2022-06-29)
NA [auth U]SCOP2 FamilyJAB1/Mov34/MPN/PAD-1/JAMM domain-like 8053250 4006292 SCOP2 (2022-06-29)
NA [auth U]SCOP2 SuperfamilyEIF3 subunit F C-terminal domain-like 8053251 3002167 SCOP2 (2022-06-29)
NA [auth U]SCOP2 SuperfamilyJAB1/MPN domain-like 8053252 3001105 SCOP2 (2022-06-29)
HA [auth R]SCOP2B SuperfamilyTPR-like 8057045 3001345 SCOP2B (2022-06-29)
HA [auth R]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057047 3000034 SCOP2B (2022-06-29)
FA [auth Q]SCOP2B SuperfamilyWinged helix DNA-binding domain 8067905 3000034 SCOP2B (2022-06-29)
RA [auth X]SCOP2 FamilyProteasome subunits 8064053 4002254 SCOP2 (2022-06-29)
RA [auth X]SCOP2 SuperfamilyClass II glutamine amidotransferases 8064054 3000131 SCOP2 (2022-06-29)
AA [auth n]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064054 3000131 SCOP2B (2022-06-29)
Y [auth m]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064060 3000131 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064060 3000131 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064022 3000131 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064022 3000131 SCOP2B (2022-06-29)
CA [auth o]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079175 3000131 SCOP2B (2022-06-29)
A [auth a]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079175 3000131 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
KA [auth s]e5gjqs1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
I [auth e]e5gjqe1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
U [auth k]e5gjqk1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
H [auth E]e5gjqE1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
IA [auth r]e5gjqr1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
G [auth d]e5gjqd1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
S [auth j]e5gjqj1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
F [auth D]e5gjqD1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
GA [auth q]e5gjqq1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
E [auth c]e5gjqc1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
Q [auth i]e5gjqi1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
D [auth C]e5gjqC1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
VA [auth y]e5gjqy1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
UA [auth x]e5gjqx1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
TA [auth Z]e5gjqZ1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
QA [auth W]e5gjqW1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
EA [auth p]e5gjqp1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
C [auth b]e5gjqb1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
PA [auth V]e5gjqV1 A: Type II ABC importer transmembrane domain foldX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: SelB-wing_3F:ECOD (20:10:01)
NA [auth U]e5gjqU2 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
NA [auth U]e5gjqU3 A: Type II ABC importer transmembrane domain foldX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: SelB-wing_3F:ECOD (20:10:01)
LA [auth T]e5gjqT1 A: HTHX: HTHH: winged helix domainT: TAFII55_NF:ECOD (20:10:01)
HA [auth R]e5gjqR1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
FA [auth Q]e5gjqQ1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
DA [auth P]e5gjqP1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
BA [auth O]e5gjqO1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
RA [auth X]e5gjqX1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
AA [auth n]e5gjqn1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
Z [auth N]e5gjqN1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
O [auth h]e5gjqh1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
Be5gjqB1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
X [auth M]e5gjqM1 A: Immunoglobulin-like beta-sandwichX: Immunoglobulin-relatedH: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeT: V-setF:ECOD (20:10:01)
V [auth L]e5gjqL1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
T [auth K]e5gjqK1 A: omega toxin-likeX: omega toxin-relatedH: omega toxin-relatedT:F:ECOD (20:10:01)
R [auth J]e5gjqJ1 A: omega toxin-likeX: omega toxin-relatedH: omega toxin-relatedT:F:ECOD (20:10:01)
P [auth I]e5gjqI1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
N [auth H]e5gjqH1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
OA [auth u]e5gjqu1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
M [auth g]e5gjqg1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
Y [auth m]e5gjqm1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
L [auth G]e5gjqG1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
MA [auth t]e5gjqt1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
K [auth f]e5gjqf1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
W [auth l]e5gjql1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
J [auth F]e5gjqF1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
CA [auth o]e5gjqo1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)
A [auth a]e5gjqa1 A: HTHX: HTHH: winged helix domainT: AMP-binding,ACAS_NF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth E],
U [auth k]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
H [auth E],
U [auth k]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
F [auth D],
S [auth j]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
F [auth D],
S [auth j]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
D [auth C],
Q [auth i]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
D [auth C],
Q [auth i]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
TA [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
SA [auth Y]PF05160DSS1/SEM1 family (DSS1_SEM1)DSS1/SEM1 family- Family
SA [auth Y]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
QA [auth W]PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domainDomain
PA [auth V]PF2359426S proteasome regulatory subunit RPN11 C-terminal domain (RPN11_C)26S proteasome regulatory subunit RPN11 C-terminal domainThis entry represents the C-terminal helical region of 26S proteosomal subunits. This region is involved in forming a helical bundle with other RPN subunits to help with assembly of the proteosome lid [1]. Domain
NA [auth U]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
NA [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
NA [auth U]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
LA [auth T]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
LA [auth T]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
JA [auth S]PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
JA [auth S]PF25573PSMD3-like, N-terminal TPR repeats (TPR_PSMD3_N)PSMD3-like, N-terminal TPR repeats- Repeat
JA [auth S]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
HA [auth R]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
HA [auth R]PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. Domain
HA [auth R]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
HA [auth R]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
FA [auth Q]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
FA [auth Q]PF1805526S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N)26S proteasome regulatory subunit RPN6 N-terminal domainThis is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory par ...This is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory particles (RPs). The CP forms the catalytic chamber and the RP is formed from two subcomplexes known as the lid and the base [1]. The lid comprises nine Rpn subunits in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6) [2]. Phosphorylation of Rpn6 enhances proteasome ATPase activity and promotes the formation of doubly capped (30S) proteasome, hence accelerating the degradation of short-lived proteins [3].
Domain
FA [auth Q]PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. Domain
FA [auth Q]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
DA [auth P]PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degradation machine: the lid, the base, and the core. The helices found at the C terminus of each lid subunit form a helical bundle that directs the ordered self-assembly of the lid subcomplex. This domain which comprises the tail of RPN5 along with the tail of Rpn9, are important for Rpn12 binding to the lid [1].
Domain
DA [auth P]PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
DA [auth P]PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
DA [auth P]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
BA [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
BA [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
AA [auth n],
RA [auth X]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
AA [auth n],
RA [auth X]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
AA [auth n],
RA [auth X]		PF00443Ubiquitin carboxyl-terminal hydrolase (UCH)Ubiquitin carboxyl-terminal hydrolase- Family
Z [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
Z [auth N]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
Z [auth N]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
Z [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating interactions with the ubiquitin-binding subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were shown to be equally effective at binding Rpn13. Multiple sequence alignments indicate that Rpn2 orthologs are highly conserved in this C-terminal region and share characteristic acidic, aromatic, and proline residues, suggesting a common function. In the structure of Rpn2 from S. cerevisiae , this region is exposed and disordered, and is thus accessible for associating with Rpn13. The Rpn2 binding surface of human Rpn13 has been mapped by nuclear magnetic resonance titration to one surface of its Pru domain [1].
Domain
Z [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domain- Repeat
Z [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
B,
O [auth h]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
B,
O [auth h]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
B,
O [auth h]		PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
X [auth M]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
X [auth M]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
X [auth M]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
X [auth M]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
X [auth M]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
V [auth L]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
V [auth L]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
V [auth L]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
V [auth L]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
V [auth L]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
T [auth K]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
T [auth K]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
T [auth K]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
T [auth K]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
T [auth K]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
R [auth J]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
R [auth J]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
R [auth J]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
R [auth J]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
R [auth J]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
P [auth I]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
P [auth I]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
P [auth I]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
P [auth I]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
P [auth I]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
N [auth H]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
N [auth H]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
N [auth H]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
N [auth H]PF2123626S proteasome regulatory subunit 7, OB domain (OB_PRS7)26S proteasome regulatory subunit 7, OB domainThis is the OB domain from 26S proteasome regulatory subunit 7 (PRS7, also known as PSMC2, Rpt1 or MSS1), a component of the 19S proteasome cap [1-5]. These are one of six ATPases of the regulatory particle that form a heterohexameric ring. This doma ...This is the OB domain from 26S proteasome regulatory subunit 7 (PRS7, also known as PSMC2, Rpt1 or MSS1), a component of the 19S proteasome cap [1-5]. These are one of six ATPases of the regulatory particle that form a heterohexameric ring. This domain mediates interactions with USP14 or Ubp6 [2,4].
Domain
N [auth H]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
L [auth G],
Y [auth m]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
L [auth G],
Y [auth m]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
J [auth F],
W [auth l]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
J [auth F],
W [auth l]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth e],
KA [auth s]		Proteasome subunit beta type-5
H [auth E],
U [auth k]		Proteasome subunit alpha type-7
G [auth d],
IA [auth r]		Proteasome subunit beta type-2-
F [auth D],
S [auth j]		Proteasome subunit alpha type-4-
E [auth c],
GA [auth q]		Proteasome subunit beta type-3-
D [auth C],
Q [auth i]		Proteasome subunit alpha type-2-
VA [auth y]Polyubiquitin-B
UA [auth x]Ubiquitin carboxyl-terminal hydrolase 14
TA [auth Z]26S proteasome non-ATPase regulatory subunit 2
SA [auth Y]26S proteasome complex subunit DSS1
QA [auth W]26S proteasome non-ATPase regulatory subunit 4
C [auth b],
EA [auth p]		Proteasome subunit beta type-7
PA [auth V]26S proteasome non-ATPase regulatory subunit 14
NA [auth U]26S proteasome non-ATPase regulatory subunit 7
LA [auth T]26S proteasome non-ATPase regulatory subunit 8-
JA [auth S]26S proteasome non-ATPase regulatory subunit 3
HA [auth R]26S proteasome non-ATPase regulatory subunit 6-
FA [auth Q]26S proteasome non-ATPase regulatory subunit 11
DA [auth P]26S proteasome non-ATPase regulatory subunit 12-
BA [auth O]26S proteasome non-ATPase regulatory subunit 13
AA [auth n],
RA [auth X]		Proteasome subunit alpha type-3
Z [auth N]26S proteasome non-ATPase regulatory subunit 1
B,
O [auth h]		Proteasome subunit alpha type-6
X [auth M]26S protease regulatory subunit 6A
V [auth L]26S protease regulatory subunit 10B
T [auth K]26S protease regulatory subunit 6B
R [auth J]26S protease regulatory subunit 8
P [auth I]26S protease regulatory subunit 4
N [auth H]26S protease regulatory subunit 7
M [auth g],
OA [auth u]		Proteasome subunit beta type-4
L [auth G],
Y [auth m]		Proteasome subunit alpha type-1
K [auth f],
MA [auth t]		Proteasome subunit beta type-1-
J [auth F],
W [auth l]		Proteasome subunit alpha type-5-
A [auth a],
CA [auth o]		Proteasome subunit beta type-6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth e],
KA [auth s]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
I [auth e],
KA [auth s]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
I [auth e],
KA [auth s]		IPR023333Proteasome B-type subunitFamily
I [auth e],
KA [auth s]		IPR001353Proteasome, subunit alpha/betaFamily
I [auth e],
KA [auth s]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
H [auth E],
U [auth k]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H [auth E],
U [auth k]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
H [auth E],
U [auth k]		IPR050115Proteasome subunit alphaFamily
H [auth E],
U [auth k]		IPR023332Proteasome alpha-type subunitFamily
H [auth E],
U [auth k]		IPR001353Proteasome, subunit alpha/betaFamily
G [auth d],
IA [auth r]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
G [auth d],
IA [auth r]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G [auth d],
IA [auth r]		IPR023333Proteasome B-type subunitFamily
G [auth d],
IA [auth r]		IPR001353Proteasome, subunit alpha/betaFamily
G [auth d],
IA [auth r]		IPR035206Proteasome subunit beta 2Family
F [auth D],
S [auth j]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
F [auth D],
S [auth j]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
F [auth D],
S [auth j]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
F [auth D],
S [auth j]		IPR050115Proteasome subunit alphaFamily
F [auth D],
S [auth j]		IPR023332Proteasome alpha-type subunitFamily
F [auth D],
S [auth j]		IPR001353Proteasome, subunit alpha/betaFamily
E [auth c],
GA [auth q]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
E [auth c],
GA [auth q]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
E [auth c],
GA [auth q]		IPR023333Proteasome B-type subunitFamily
E [auth c],
GA [auth q]		IPR001353Proteasome, subunit alpha/betaFamily
E [auth c],
GA [auth q]		IPR033811Proteasome beta 3 subunitFamily
D [auth C],
Q [auth i]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
D [auth C],
Q [auth i]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
D [auth C],
Q [auth i]		IPR050115Proteasome subunit alphaFamily
D [auth C],
Q [auth i]		IPR023332Proteasome alpha-type subunitFamily
D [auth C],
Q [auth i]		IPR001353Proteasome, subunit alpha/betaFamily
VA [auth y]IPR019954Ubiquitin conserved siteConserved Site
VA [auth y]IPR050158Ubiquitin and ubiquitin-likeFamily
VA [auth y]IPR000626Ubiquitin-like domainDomain
VA [auth y]IPR019956Ubiquitin domainDomain
VA [auth y]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
UA [auth x]IPR019954Ubiquitin conserved siteConserved Site
UA [auth x]IPR044635Ubiquitin carboxyl-terminal hydrolase 14-likeFamily
UA [auth x]IPR018200Ubiquitin specific protease, conserved siteConserved Site
UA [auth x]IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
UA [auth x]IPR000626Ubiquitin-like domainDomain
UA [auth x]IPR028889Ubiquitin specific protease UPS, catalytic domainDomain
UA [auth x]IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolaseDomain
UA [auth x]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
TA [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
TA [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
TA [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
TA [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
TA [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
TA [auth Z]IPR040892RPN1, N-terminalDomain
SA [auth Y]IPR007834DSS1/SEM1Family
QA [auth W]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
QA [auth W]IPR02704026S proteasome non-ATPase regulatory subunit 4Family
QA [auth W]IPR002035von Willebrand factor, type ADomain
QA [auth W]IPR003903Ubiquitin interacting motifConserved Site
QA [auth W]IPR049590PSMD4, RAZUL domainDomain
C [auth b],
EA [auth p]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
C [auth b],
EA [auth p]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
C [auth b],
EA [auth p]		IPR024689Proteasome beta subunit, C-terminalDomain
C [auth b],
EA [auth p]		IPR023333Proteasome B-type subunitFamily
C [auth b],
EA [auth p]		IPR001353Proteasome, subunit alpha/betaFamily
C [auth b],
EA [auth p]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
PA [auth V]IPR05626326S proteasome regulatory subunit RPN11, C-terminal domainDomain
PA [auth V]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
PA [auth V]IPR037518MPN domainDomain
PA [auth V]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
NA [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
NA [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
NA [auth U]IPR037518MPN domainDomain
NA [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
LA [auth T]IPR000717Proteasome component (PCI) domainDomain
LA [auth T]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
LA [auth T]IPR033464CSN8/PSMD8/EIF3KDomain
JA [auth S]IPR01358626S proteasome non-ATPase regulatory subunit 3, C-terminalDomain
JA [auth S]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
JA [auth S]IPR050756COP9 signalosome complex subunit 3Family
JA [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
JA [auth S]IPR000717Proteasome component (PCI) domainDomain
JA [auth S]IPR05798526S proteasome non-ATPase regulatory subunit 3, N-terminal TPR repeatsDomain
HA [auth R]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
HA [auth R]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
HA [auth R]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
HA [auth R]IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
HA [auth R]IPR000717Proteasome component (PCI) domainDomain
HA [auth R]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
FA [auth Q]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
FA [auth Q]IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
FA [auth Q]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
FA [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
FA [auth Q]IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
FA [auth Q]IPR000717Proteasome component (PCI) domainDomain
DA [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DA [auth P]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
DA [auth P]IPR000717Proteasome component (PCI) domainDomain
DA [auth P]IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
DA [auth P]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
DA [auth P]IPR054559PSMD12/CSN4-like, N-terminalDomain
BA [auth O]IPR054179PSD13, N-terminalDomain
BA [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
BA [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
BA [auth O]IPR000717Proteasome component (PCI) domainDomain
AA [auth n],
RA [auth X]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
AA [auth n],
RA [auth X]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
AA [auth n],
RA [auth X]		IPR050115Proteasome subunit alphaFamily
AA [auth n],
RA [auth X]		IPR023332Proteasome alpha-type subunitFamily
AA [auth n],
RA [auth X]		IPR001353Proteasome, subunit alpha/betaFamily
Z [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
Z [auth N]IPR016024Armadillo-type foldHomologous Superfamily
Z [auth N]IPR002015Proteasome/cyclosome repeatRepeat
Z [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
Z [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
Z [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
B,
O [auth h]		IPR034642Proteasome subunit alpha6Family
B,
O [auth h]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
B,
O [auth h]		IPR050115Proteasome subunit alphaFamily
B,
O [auth h]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
B,
O [auth h]		IPR023332Proteasome alpha-type subunitFamily
B,
O [auth h]		IPR001353Proteasome, subunit alpha/betaFamily
X [auth M]IPR05022126S Proteasome Regulatory ATPaseFamily
X [auth M]IPR003593AAA+ ATPase domainDomain
X [auth M]IPR003959ATPase, AAA-type, coreDomain
X [auth M]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
X [auth M]IPR041569AAA ATPase, AAA+ lid domainDomain
X [auth M]IPR032501Proteasomal ATPase, second OB domainDomain
X [auth M]IPR003960ATPase, AAA-type, conserved siteConserved Site
X [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
V [auth L]IPR05022126S Proteasome Regulatory ATPaseFamily
V [auth L]IPR003593AAA+ ATPase domainDomain
V [auth L]IPR003959ATPase, AAA-type, coreDomain
V [auth L]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
V [auth L]IPR041569AAA ATPase, AAA+ lid domainDomain
V [auth L]IPR032501Proteasomal ATPase, second OB domainDomain
V [auth L]IPR003960ATPase, AAA-type, conserved siteConserved Site
V [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth K]IPR05022126S Proteasome Regulatory ATPaseFamily
T [auth K]IPR041569AAA ATPase, AAA+ lid domainDomain
T [auth K]IPR032501Proteasomal ATPase, second OB domainDomain
T [auth K]IPR003960ATPase, AAA-type, conserved siteConserved Site
T [auth K]IPR003593AAA+ ATPase domainDomain
T [auth K]IPR003959ATPase, AAA-type, coreDomain
T [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth K]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
R [auth J]IPR05022126S Proteasome Regulatory ATPaseFamily
R [auth J]IPR003593AAA+ ATPase domainDomain
R [auth J]IPR003959ATPase, AAA-type, coreDomain
R [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
R [auth J]IPR041569AAA ATPase, AAA+ lid domainDomain
R [auth J]IPR032501Proteasomal ATPase, second OB domainDomain
R [auth J]IPR003960ATPase, AAA-type, conserved siteConserved Site
R [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth I]IPR05022126S Proteasome Regulatory ATPaseFamily
P [auth I]IPR041569AAA ATPase, AAA+ lid domainDomain
P [auth I]IPR032501Proteasomal ATPase, second OB domainDomain
P [auth I]IPR003960ATPase, AAA-type, conserved siteConserved Site
P [auth I]IPR003593AAA+ ATPase domainDomain
P [auth I]IPR003959ATPase, AAA-type, coreDomain
P [auth I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth H]IPR05022126S Proteasome Regulatory ATPaseFamily
N [auth H]IPR003593AAA+ ATPase domainDomain
N [auth H]IPR003959ATPase, AAA-type, coreDomain
N [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth H]IPR04872326S proteasome regulatory subunit 7-like, OB domainDomain
N [auth H]IPR041569AAA ATPase, AAA+ lid domainDomain
N [auth H]IPR003960ATPase, AAA-type, conserved siteConserved Site
N [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth g],
OA [auth u]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
M [auth g],
OA [auth u]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
M [auth g],
OA [auth u]		IPR023333Proteasome B-type subunitFamily
M [auth g],
OA [auth u]		IPR016295Proteasome subunit beta 4Family
M [auth g],
OA [auth u]		IPR001353Proteasome, subunit alpha/betaFamily
L [auth G],
Y [auth m]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
L [auth G],
Y [auth m]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
L [auth G],
Y [auth m]		IPR050115Proteasome subunit alphaFamily
L [auth G],
Y [auth m]		IPR035144Proteasome subunit alpha 1Family
L [auth G],
Y [auth m]		IPR023332Proteasome alpha-type subunitFamily
L [auth G],
Y [auth m]		IPR001353Proteasome, subunit alpha/betaFamily
K [auth f],
MA [auth t]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
K [auth f],
MA [auth t]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
K [auth f],
MA [auth t]		IPR023333Proteasome B-type subunitFamily
K [auth f],
MA [auth t]		IPR001353Proteasome, subunit alpha/betaFamily
J [auth F],
W [auth l]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J [auth F],
W [auth l]		IPR033812Proteasome subunit alpha5Family
J [auth F],
W [auth l]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
J [auth F],
W [auth l]		IPR050115Proteasome subunit alphaFamily
J [auth F],
W [auth l]		IPR023332Proteasome alpha-type subunitFamily
J [auth F],
W [auth l]		IPR001353Proteasome, subunit alpha/betaFamily
A [auth a],
CA [auth o]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
A [auth a],
CA [auth o]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
A [auth a],
CA [auth o]		IPR023333Proteasome B-type subunitFamily
A [auth a],
CA [auth o]		IPR001353Proteasome, subunit alpha/betaFamily
A [auth a],
CA [auth o]		IPR000243Peptidase T1A, proteasome beta-subunitFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth e],
KA [auth s]		Pharos:  P28074
H [auth E],
U [auth k]		Pharos:  O14818
G [auth d],
IA [auth r]		Pharos:  P49721
F [auth D],
S [auth j]		Pharos:  P25789
E [auth c],
GA [auth q]		Pharos:  P49720
D [auth C],
Q [auth i]		Pharos:  P25787
VA [auth y]Pharos:  P0CG47
UA [auth x]Pharos:  P54578
TA [auth Z]Pharos:  Q13200
SA [auth Y]Pharos:  P60896
QA [auth W]Pharos:  P55036
C [auth b],
EA [auth p]		Pharos:  Q99436
PA [auth V]Pharos:  O00487
NA [auth U]Pharos:  P51665
LA [auth T]Pharos:  P48556
JA [auth S]Pharos:  O43242
HA [auth R]Pharos:  Q15008
FA [auth Q]Pharos:  O00231
DA [auth P]Pharos:  O00232
BA [auth O]Pharos:  Q9UNM6
AA [auth n],
RA [auth X]		Pharos:  P25788
Z [auth N]Pharos:  Q99460
B,
O [auth h]		Pharos:  P60900
X [auth M]Pharos:  P17980
T [auth K]Pharos:  P43686
R [auth J]Pharos:  P62195
N [auth H]Pharos:  P35998
M [auth g],
OA [auth u]		Pharos:  P28070
L [auth G],
Y [auth m]		Pharos:  P25786
K [auth f],
MA [auth t]		Pharos:  P20618
J [auth F],
W [auth l]		Pharos:  P28066
A [auth a],
CA [auth o]		Pharos:  P28072