Crystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8043757 | 3001442 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8068338 | 3000068 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8038695 | 3001442 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8039031 | 3000068 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Glyco_transf_41 | e5uanB1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Glyco_transf_41 | ECOD (develop294) |
| A | Glyco_transf_41 | e5uanA1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Glyco_transf_41 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
| B | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (4.3.0) |
| A | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (utative) |
| A | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00104 | Ligand-binding domain of nuclear hormone receptor (Hormone_recep) | Ligand-binding domain of nuclear hormone receptor | This all helical domain is involved in binding the hormone in these receptors. | Domain | |
| PF00105 | Double treble clef zinc finger, C4 type (zf-C4) | Double treble clef zinc finger, C4 type | In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other. | Domain |














