6C23
Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth M] | SCOP2B Superfamily | VEFS box-like | 8090819 | 3002459 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2B Superfamily | WD40 repeat-like | 8053350 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth M] | PF09733 | e6c23M1 | A: alpha arrays | X: lambda integrase-N-like | H: VEFS domain (From Topology) | T: VEFS domain | F: PF09733 | ECOD (1.6) |
C [auth K] | PF00856 | e6c23K1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: PF00856 | ECOD (1.6) |
C [auth K] | F_UNCLASSIFIED | e6c23K4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth K] | F_UNCLASSIFIED | e6c23K5 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth K] | PF18264 | e6c23K3 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: PF18264 | ECOD (1.6) |
C [auth K] | PF21358 | e6c23K2 | A: few secondary structure elements | X: Ezh2 MCSS domain (From Topology) | H: Ezh2 MCSS domain (From Topology) | T: Ezh2 MCSS domain | F: PF21358 | ECOD (1.6) |
K [auth C] | PF18118 | e6c23C2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF18118 | ECOD (1.6) |
K [auth C] | PF11616 | e6c23C1 | A: extended segments | X: Ezh2 N-terminal domain (From Topology) | H: Ezh2 N-terminal domain (From Topology) | T: Ezh2 N-terminal domain | F: PF11616 | ECOD (1.6) |
D [auth L] | PF00400 | e6c23L1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
F [auth N] | PF00400,PF12265 | e6c23N1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400,PF12265 | ECOD (1.6) |
H [auth P] | F_UNCLASSIFIED | e6c23P1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth L] | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
F [auth N] | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth M], I [auth Q] | PF09733 | VEFS-Box of polycomb protein (VEFS-Box) | VEFS-Box of polycomb protein | - | Family |
C [auth K], K [auth C] | PF18264 | CXC domain (preSET_CXC) | CXC domain | This domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain. | Domain |
C [auth K], K [auth C] | PF00856 | SET domain (SET) | SET domain | - | Family |
C [auth K], K [auth C] | PF18118 | Polycomb repressive complex 2 tri-helical domain (PRC2_HTH_1) | Polycomb repressive complex 2 tri-helical domain | This domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain mak ... | Domain |
C [auth K], K [auth C] | PF11616 | WD repeat binding protein EZH2 (EZH2_WD-Binding) | WD repeat binding protein EZH2 | - | Family |
D [auth L] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
F [auth N] | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd) | Histone-binding protein RBBP4 or subunit C of CAF1 complex | - | Repeat |
F [auth N] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
J [auth Z] | UNK | |
L [auth B] | M3L | Parent Component: LYS :  AA0074 :  N6,N6,N6-trimethyl-L-lysine MOD:00083 |