6IWB | pdb_00006iwb

Crystal structure of a computationally designed protein (LD3) in complex with BCL-2

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e6iwbD1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Ribonuc_L-PSP	F:	ECOD (20:10:01)
B		e6iwbB1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: SBP_bac_1	F:	ECOD (20:10:01)
C		e6iwbC1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: SBP_bac_1	F:	ECOD (20:10:01)
A		e6iwbA1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: Ribonuc_L-PSP	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.20.120.20	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Apolipoprotein	CATH (utative)
A	1.20.120.20	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Apolipoprotein	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family
A, C	PF01442	Apolipoprotein A1/A4/E domain (Apolipoprotein)	Apolipoprotein A1/A4/E domain	These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Swiss:P02647 Apolipoprotein A-I. Swiss:P06727 Apolipoprotein A-IV. Swiss:P02649 Apolipoprotein E.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2	sequence-specific DNA binding DNA binding binding nucleic acid binding death domain binding protein binding BH3 domain binding BH domain binding protein domain specific binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding protein phosphatase binding phosphatase binding sequence-specific DNA binding DNA binding binding nucleic acid binding death domain binding protein binding BH3 domain binding BH domain binding protein domain specific binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding protein phosphatase binding phosphatase binding protein phosphatase 2A binding protease binding transcription factor binding DNA-binding transcription factor binding molecular adaptor activity identical protein binding protein heterodimerization activity protein dimerization activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity molecular function inhibitor activity transporter inhibitor activity channel regulator activity molecular function regulator activity channel inhibitor activity transporter regulator activity	response to stimulus response to chemical response to xenobiotic stimulus inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis response to stimulus response to chemical response to xenobiotic stimulus inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of biological process regulation of cellular process regulation of mitochondrial depolarization negative regulation of membrane depolarization biological regulation negative regulation of biological process mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization cellular process regulation of biological quality negative regulation of mitochondrial depolarization regulation of membrane potential response to stress response to ischemia catabolic process autophagy metabolic process process utilizing autophagic mechanism apoptotic process cell death programmed cell death response to radiation response to abiotic stimulus negative regulation of programmed cell death regulation of apoptotic process regulation of anoikis regulation of programmed cell death negative regulation of anoikis negative regulation of apoptotic process anoikis negative regulation of cellular process multicellular organismal process B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis immune system process homeostasis of number of cells lymphocyte homeostasis response to toxic substance developmental process epithelium development epidermis development molting cycle process hair cycle epidermis morphogenesis animal organ development morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis skin development skin epidermis development hair follicle development molting cycle anatomical structure development hair cycle process hair follicle morphogenesis positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of biological process positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process response to metal ion response to iron ion axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation cellular component organization or biogenesis system development plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons neuron development mesenchyme development mesenchymal cell development mesenchymal cell differentiation immune system development spleen development hematopoietic or lymphoid organ development negative regulation of locomotion negative regulation of cell motility negative regulation of cell migration carbohydrate derivative biosynthetic process regulation of biosynthetic process regulation of protein metabolic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process regulation of macromolecule metabolic process glycoprotein metabolic process macromolecule biosynthetic process regulation of glycoprotein metabolic process regulation of primary metabolic process biosynthetic process regulation of macromolecule biosynthetic process protein metabolic process macromolecule metabolic process regulation of metabolic process regulation of glycoprotein biosynthetic process ossification digestive system development tube development digestive tract development tube morphogenesis digestive tract morphogenesis negative regulation of catabolic process negative regulation of metabolic process regulation of catabolic process regulation of autophagy negative regulation of autophagy glomerulus development nephron development kidney development renal system development regulation of leukocyte apoptotic process regulation of lymphocyte apoptotic process leukocyte apoptotic process negative regulation of T cell apoptotic process lymphocyte apoptotic process negative regulation of leukocyte apoptotic process regulation of T cell apoptotic process T cell apoptotic process negative regulation of lymphocyte apoptotic process regulation of developmental process regulation of cell differentiation positive regulation of cell maturation regulation of neuron maturation regulation of cell development positive regulation of developmental process positive regulation of cell differentiation cell maturation regulation of cell maturation positive regulation of neuron maturation positive regulation of cell development developmental maturation anatomical structure maturation neuron maturation regulation of neuron differentiation organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization response to hydrogen peroxide response to oxidative stress response to oxygen-containing compound response to reactive oxygen species regulation of localization regulation of calcium ion transport cellular localization regulation of calcium ion transport into cytosol transport monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport negative regulation of transmembrane transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport localization negative regulation of monoatomic ion transmembrane transport monoatomic ion transport negative regulation of cation transmembrane transport negative regulation of calcium ion transport into cytosol monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of transport regulation of monoatomic ion transport positive regulation of cytosolic calcium ion concentration establishment of localization negative regulation of calcium ion transport transmembrane transport regulation of transmembrane transport regulation of cellular localization regulation of monoatomic cation transmembrane transport negative regulation of calcium ion transmembrane transport negative regulation of cytosolic calcium ion concentration calcium ion transmembrane transport calcium ion transport into cytosol regulation of growth regulation of cellular component organization growth positive regulation of cell growth regulation of cell growth cell growth positive regulation of growth cochlear nucleus development pons development head development brain development central nervous system development metencephalon development hindbrain development neural nucleus development cell adhesion cell-matrix adhesion regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion cellular response to stimulus negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling signaling regulation of signal transduction negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication regulation of apoptotic signaling pathway developmental growth organ growth neuron apoptotic process motor neuron apoptotic process cell population proliferation osteoblast proliferation B cell apoptotic process pigment cell differentiation pigmentation developmental pigmentation melanocyte differentiation sexual reproduction reproductive process multicellular organismal reproductive process oogenesis cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation gamete generation oocyte development germ cell development oocyte differentiation response to peptide response to cytokine dendritic cell apoptotic process negative regulation of dendritic cell apoptotic process regulation of dendritic cell apoptotic process positive regulation of cell population proliferation regulation of cell population proliferation B cell activation cell activation B cell proliferation lymphocyte activation leukocyte proliferation leukocyte activation mononuclear cell proliferation lymphocyte proliferation regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage intracellular signal transduction regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway negative regulation of signal transduction by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway by p53 class mediator negative regulation of intracellular signal transduction regulation of intrinsic apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator cellular response to stress regulation of intracellular signal transduction regulation of response to stress regulation of signal transduction by p53 class mediator signal transduction by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator DNA damage response regulation of intrinsic apoptotic signaling pathway by p53 class mediator myeloid cell apoptotic process negative regulation of myeloid cell apoptotic process regulation of myeloid cell apoptotic process regulation of protein localization macromolecule localization intracellular protein localization positive regulation of skeletal muscle tissue development muscle cell differentiation regulation of skeletal muscle tissue development myotube differentiation muscle structure development positive regulation of muscle organ development regulation of skeletal muscle fiber development positive regulation of skeletal muscle fiber development muscle tissue development myotube cell development skeletal muscle fiber development positive regulation of striated muscle tissue development regulation of striated muscle tissue development positive regulation of muscle cell differentiation positive regulation of muscle tissue development regulation of muscle cell differentiation positive regulation of multicellular organismal process striated muscle cell differentiation regulation of muscle tissue development skeletal muscle tissue development regulation of striated muscle cell differentiation striated muscle tissue development skeletal muscle organ development striated muscle cell development muscle cell development regulation of myotube differentiation positive regulation of striated muscle cell differentiation regulation of multicellular organismal process muscle organ development regulation of muscle organ development response to ionizing radiation response to gamma radiation stem cell development stem cell differentiation pigment metabolic process phenol-containing compound metabolic process melanin metabolic process secondary metabolic process negative regulation of multicellular organismal process regulation of ossification negative regulation of ossification gonad development reproductive system development sex differentiation male gonad development male sex differentiation development of primary male sexual characteristics development of primary sexual characteristics reproductive structure development hemopoiesis B cell lineage commitment mononuclear cell differentiation lymphocyte differentiation B cell differentiation cell fate commitment leukocyte differentiation homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis renal system process system process response to light stimulus response to UV response to UV-B cellular response to nutrient levels response to nutrient levels response to starvation cellular response to glucose starvation cellular response to starvation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus response to hypoxia response to oxygen levels gene expression regulation of gene expression positive regulation of programmed cell death positive regulation of apoptotic process negative regulation of cell growth negative regulation of growth extrinsic apoptotic signaling pathway via death domain receptors T cell differentiation in thymus T cell activation T cell differentiation protein polyubiquitination protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal female gonad development female sex differentiation development of primary female sexual characteristics ovarian follicle development regulation of protein stability negative regulation of cell population proliferation negative regulation of osteoblast proliferation regulation of osteoblast proliferation mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process metanephros development gland morphogenesis gland development animal organ morphogenesis positive regulation of melanocyte differentiation regulation of pigment cell differentiation regulation of pigmentation positive regulation of developmental pigmentation regulation of melanocyte differentiation positive regulation of pigment cell differentiation regulation of developmental pigmentation sensory organ development visual system development eye morphogenesis regulation of retinal cell programmed cell death sensory system development eye development negative regulation of developmental process programmed cell death involved in cell development sensory organ morphogenesis retinal cell programmed cell death negative regulation of retinal cell programmed cell death focal adhesion assembly cell-substrate junction assembly cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cell-substrate junction organization positive regulation of B cell proliferation regulation of leukocyte activation regulation of cell activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell proliferation regulation of B cell activation positive regulation of leukocyte activation positive regulation of mononuclear cell proliferation regulation of immune system process positive regulation of immune system process regulation of lymphocyte proliferation regulation of leukocyte proliferation positive regulation of lymphocyte proliferation positive regulation of B cell activation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation mesonephric epithelium development kidney epithelium development nephron morphogenesis branching morphogenesis of an epithelial tube nephron tubule morphogenesis nephron epithelium morphogenesis nephron tubule development ureteric bud morphogenesis branching involved in ureteric bud morphogenesis renal tubule development epithelial tube morphogenesis nephron epithelium development ureteric bud development mesonephros development kidney morphogenesis morphogenesis of a branching structure mesonephric tubule morphogenesis mesonephric tubule development renal tubule morphogenesis morphogenesis of a branching epithelium biological process involved in interspecies interaction between organisms defense response to virus defense response response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus regulation of epithelial cell apoptotic process epithelial cell apoptotic process negative regulation of epithelial cell apoptotic process regulation of B cell apoptotic process negative regulation of B cell apoptotic process immune response-regulating cell surface receptor signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response immune response-activating cell surface receptor signaling pathway immune response B cell receptor signaling pathway regulation of immune response antigen receptor-mediated signaling pathway activation of immune response thymus development vesicle organization cellular pigmentation pigment granule organization ear development multi-multicellular organism process female pregnancy multi-organism reproductive process humoral immune response reactive oxygen species metabolic process T cell homeostasis CD4-positive or CD8-positive, alpha-beta T cell lineage commitment CD8-positive, alpha-beta T cell activation CD8-positive, alpha-beta T cell differentiation alpha-beta T cell differentiation alpha-beta T cell activation alpha-beta T cell lineage commitment T cell lineage commitment CD8-positive, alpha-beta T cell lineage commitment positive T cell selection T cell selection negative regulation of neuron apoptotic process regulation of neuron apoptotic process response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid lymphoid progenitor cell differentiation hematopoietic progenitor cell differentiation hematopoietic stem cell differentiation regulation of cell cycle phase transition negative regulation of cell cycle regulation of cell cycle G1/S phase transition negative regulation of mitotic cell cycle regulation of mitotic cell cycle negative regulation of cell cycle phase transition regulation of cell cycle negative regulation of G1/S transition of mitotic cell cycle negative regulation of mitotic cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition negative regulation of cell cycle process regulation of mitotic cell cycle phase transition regulation of G1/S transition of mitotic cell cycle regulation of response to nutrient levels nitrogen utilization regulation of nitrogen utilization intracellular nitrogen homeostasis regulation of viral life cycle regulation of viral process viral genome replication viral process regulation of viral genome replication viral life cycle negative regulation of cellular pH reduction intracellular pH reduction regulation of intracellular pH regulation of cellular pH reduction regulation of pH regulation of cellular pH regeneration response to axon injury neuron projection regeneration axon regeneration response to wounding intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress response to endoplasmic reticulum stress regulation of multicellular organism growth regulation of developmental growth positive regulation of multicellular organism growth multicellular organism growth positive regulation of developmental growth behavioral defense response behavior fear response behavioral fear response multicellular organismal response to stress cell-cell adhesion response to nicotine regulation of membrane permeability regulation of mitochondrial membrane permeability apoptotic mitochondrial changes release of cytochrome c from mitochondria mitochondrion organization intrinsic apoptotic signaling pathway in response to oxidative stress post-embryonic development regulation of motor neuron apoptotic process negative regulation of motor neuron apoptotic process	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane protein-containing complex membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane protein-containing complex BCL-2 complex Bcl-2 family protein complex cytoplasm cytosol pore complex membrane protein complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane mitochondrial membrane mitochondrion organelle outer membrane bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane BAD-BCL-2 complex myelin sheath
A, C	Apolipoprotein E	amyloid-beta binding binding peptide binding phospholipid binding lipid binding protein-containing complex binding protein binding protein dimerization activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity phosphatidylcholine-sterol O-acyltransferase activator activity signaling receptor binding amyloid-beta binding binding peptide binding phospholipid binding lipid binding protein-containing complex binding protein binding protein dimerization activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity phosphatidylcholine-sterol O-acyltransferase activator activity signaling receptor binding antioxidant activity cation binding ion binding metal chelating activity metal ion binding small molecule binding identical protein binding protein homodimerization activity structural molecule activity sterol transfer activity lipid transporter activity lipid transfer activity transporter activity cholesterol transfer activity cytoskeletal protein binding tau protein binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding signaling receptor regulator activity receptor ligand activity signaling receptor activator activity lipoprotein particle binding protein-lipid complex binding low-density lipoprotein particle receptor binding lipoprotein particle receptor binding enzyme binding very-low-density lipoprotein particle receptor binding heparin binding glycosaminoglycan binding sulfur compound binding	negative regulation of long-term synaptic potentiation positive regulation of cell communication regulation of cellular process modulation of chemical synaptic transmission signaling positive regulation of biological process negative regulation of biological process cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality positive regulation of cellular process regulation of synaptic plasticity trans-synaptic signaling negative regulation of long-term synaptic potentiation positive regulation of cell communication regulation of cellular process modulation of chemical synaptic transmission signaling positive regulation of biological process negative regulation of biological process cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality positive regulation of cellular process regulation of synaptic plasticity trans-synaptic signaling regulation of biological process regulation of signaling biological regulation cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation regulation of cell communication cellular process positive regulation of signaling positive regulation of cholesterol efflux regulation of localization transport positive regulation of sterol transport regulation of lipid transport organic hydroxy compound transport localization regulation of cholesterol efflux sterol transport regulation of cholesterol transport positive regulation of cholesterol transport regulation of sterol transport regulation of transport lipid localization lipid transport positive regulation of lipid localization establishment of localization positive regulation of lipid transport positive regulation of transport regulation of lipid localization macromolecule localization cholesterol transport cholesterol efflux regulation of biosynthetic process regulation of nitric oxide biosynthetic process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process negative regulation of protein transport establishment of protein localization regulation of protein localization negative regulation of transport protein localization to extracellular region regulation of secretion by cell secretion by cell negative regulation of secretion negative regulation of cellular process negative regulation of secretion by cell intracellular protein localization negative regulation of protein localization secretion regulation of establishment of protein localization establishment of protein localization to extracellular region negative regulation of establishment of protein localization export from cell regulation of protein transport protein secretion regulation of protein secretion regulation of secretion negative regulation of protein secretion protein transport cellular response to stimulus response to stimulus negative regulation of signaling regulation of signal transduction regulation of platelet-derived growth factor receptor signaling pathway negative regulation of cell communication cell surface receptor protein tyrosine kinase signaling pathway signal transduction enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of platelet-derived growth factor receptor signaling pathway platelet-derived growth factor receptor signaling pathway negative regulation of signal transduction regulation of response to stimulus reverse cholesterol transport organic anion transport carboxylic acid transport organic acid transport monocarboxylic acid transport fatty acid transport long-chain fatty acid transport multicellular organismal process plasma lipoprotein particle clearance triglyceride-rich lipoprotein particle clearance regulation of plasma lipoprotein particle levels intermediate-density lipoprotein particle clearance amyloid precursor protein catabolic process regulation of protein metabolic process regulation of amyloid precursor protein catabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process protein metabolic process macromolecule metabolic process amyloid precursor protein metabolic process developmental process blood vessel morphogenesis tube development artery development vasculature development circulatory system development multicellular organism development anatomical structure morphogenesis tube morphogenesis anatomical structure development artery morphogenesis blood vessel development system development regulation of cholesterol metabolic process sterol metabolic process steroid metabolic process regulation of steroid metabolic process regulation of lipid metabolic process cholesterol metabolic process alcohol metabolic process secondary alcohol metabolic process regulation of small molecule metabolic process small molecule metabolic process lipid metabolic process response to nutrient levels response to caloric restriction response to stress regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process cell projection organization cell development neuron projection development cellular component organization neurogenesis neuron differentiation positive regulation of neuron projection development cell differentiation positive regulation of cell projection organization cellular component organization or biogenesis plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization chylomicron remnant clearance membrane organization cellular localization postsynapse organization neurotransmitter-gated ion channel clustering localization within membrane protein localization to membrane cell junction organization receptor clustering synapse organization NMDA glutamate receptor clustering postsynaptic membrane organization regulation of amyloid fibril formation amyloid fibril formation regulation of supramolecular fiber organization supramolecular fiber organization maintenance of location in cell maintenance of location regulation of multicellular organismal process regulation of amyloid-beta clearance amyloid-beta clearance response to oxidative stress response to chemical response to oxygen-containing compound response to reactive oxygen species negative regulation of triglyceride metabolic process neutral lipid metabolic process regulation of triglyceride metabolic process negative regulation of metabolic process triglyceride metabolic process glycerolipid metabolic process acylglycerol metabolic process negative regulation of lipid metabolic process regulation of body fluid levels regulation of response to external stimulus regulation of cell activation negative regulation of platelet activation regulation of response to wounding regulation of coagulation regulation of response to stress coagulation response to wounding regulation of hemostasis wound healing negative regulation of wound healing regulation of blood coagulation negative regulation of blood coagulation hemostasis cell activation response to external stimulus negative regulation of response to wounding blood coagulation negative regulation of cell activation negative regulation of hemostasis regulation of platelet activation negative regulation of coagulation negative regulation of response to external stimulus regulation of wound healing negative regulation of multicellular organismal process platelet activation lipoprotein biosynthetic process lipoprotein metabolic process macromolecule biosynthetic process plasma lipoprotein particle organization low-density lipoprotein particle remodeling protein-containing complex organization protein-containing complex remodeling protein-lipid complex organization plasma lipoprotein particle remodeling protein-lipid complex remodeling positive regulation of amyloid fibril formation positive regulation of protein metabolic process positive regulation of macromolecule metabolic process positive regulation of supramolecular fiber organization positive regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade virion assembly viral process viral life cycle small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of Cdc42 protein signal transduction regulation of Rho protein signal transduction Rho protein signal transduction Cdc42 protein signal transduction system process regulation of system process vascular transport regulation of lipid transport across blood-brain barrier regulation of vascular permeability circulatory system process positive regulation of lipid transport across blood-brain barrier positive regulation of transport across blood-brain barrier blood circulation transport across blood-brain barrier positive regulation of vascular permeability regulation of transport across blood-brain barrier vascular process in circulatory system positive regulation of multicellular organismal process lipid transport across blood-brain barrier regulation of defense response negative regulation of inflammatory response defense response regulation of inflammatory response negative regulation of defense response inflammatory response dendritic spine maintenance cellular component maintenance regulation of dendritic spine maintenance positive regulation of dendritic spine maintenance regulation of synapse structure or activity dendritic spine organization regulation of postsynapse organization regulation of synapse organization neuron projection organization sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis positive regulation of establishment of protein localization positive regulation of protein transport regulation of lipoprotein transport positive regulation of lipoprotein transport lipoprotein transport positive regulation of protein localization lipoprotein localization axon extension regulation of growth axonogenesis regulation of cellular component size developmental growth cell projection morphogenesis neuron projection morphogenesis developmental growth involved in morphogenesis regulation of developmental process plasma membrane bounded cell projection morphogenesis cell growth cell morphogenesis regulation of axon extension regulation of extent of cell growth regulation of cell size neuron projection extension regulation of developmental growth developmental cell growth growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation regulation of anatomical structure size behavior locomotory behavior exploration behavior locomotory exploration behavior protein import cellular response to very-low-density lipoprotein particle stimulus response to endogenous stimulus regulation of cellular response to very-low-density lipoprotein particle stimulus response to lipoprotein particle cellular response to lipoprotein particle stimulus negative regulation of intracellular signal transduction negative regulation of MAPK cascade fatty acid homeostasis gene expression high-density lipoprotein particle clearance negative regulation of locomotion regulation of cell motility endothelial cell migration negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration negative regulation of cell motility cell migration cell motility locomotion negative regulation of cell migration G protein-coupled receptor signaling pathway catabolic process protein catabolic process lipoprotein catabolic process macromolecule catabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process lipid storage nutrient storage lipid transport involved in lipid storage negative regulation of cell population proliferation cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation import into cell regulation of vesicle-mediated transport vesicle-mediated transport positive regulation of endocytosis endocytosis regulation of endocytosis multicellular organismal-level homeostasis response to dietary excess energy homeostasis sterol catabolic process alcohol catabolic process lipid catabolic process cholesterol catabolic process steroid catabolic process small molecule catabolic process AMPA glutamate receptor clustering glutamate receptor clustering triglyceride homeostasis acylglycerol homeostasis regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of Wnt signaling pathway Wnt signaling pathway regulation of Wnt signaling pathway negative regulation of canonical Wnt signaling pathway regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death triglyceride-rich lipoprotein particle remodeling very-low-density lipoprotein particle remodeling inorganic ion homeostasis intracellular calcium ion homeostasis calcium ion homeostasis cellular homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis positive regulation of dendritic spine development regulation of dendritic spine development positive regulation of developmental process dendrite development dendritic spine development negative regulation of cell projection organization negative regulation of cellular component organization negative regulation of neuron projection development regulation of cholesterol biosynthetic process regulation of steroid biosynthetic process negative regulation of small molecule metabolic process negative regulation of cholesterol metabolic process lipid biosynthetic process negative regulation of lipid biosynthetic process steroid biosynthetic process secondary alcohol biosynthetic process negative regulation of steroid metabolic process regulation of alcohol biosynthetic process small molecule biosynthetic process cholesterol biosynthetic process negative regulation of sterol biosynthetic process sterol biosynthetic process regulation of sterol biosynthetic process alcohol biosynthetic process negative regulation of steroid biosynthetic process negative regulation of alcohol biosynthetic process regulation of lipid biosynthetic process negative regulation of cholesterol biosynthetic process receptor catabolic process receptor metabolic process regulation of low-density lipoprotein particle receptor catabolic process positive regulation of receptor catabolic process low-density lipoprotein particle receptor catabolic process regulation of catabolic process positive regulation of low-density lipoprotein particle receptor catabolic process positive regulation of protein catabolic process positive regulation of catabolic process low-density lipoprotein receptor particle metabolic process regulation of receptor catabolic process regulation of protein catabolic process negative regulation of protein metabolic process organelle organization cytoskeleton organization regulation of blood vessel endothelial cell migration negative regulation of blood vessel endothelial cell migration blood vessel endothelial cell migration regulation of neuronal synaptic plasticity regulation of amyloid-beta formation negative regulation of amyloid precursor protein catabolic process amyloid-beta metabolic process amyloid-beta formation negative regulation of amyloid-beta formation nitric oxide mediated signal transduction nitric oxide-cGMP-mediated signaling proteasomal protein catabolic process regulation of proteasomal protein catabolic process positive regulation of membrane protein ectodomain proteolysis regulation of proteolysis proteolysis membrane protein proteolysis membrane protein ectodomain proteolysis regulation of membrane protein ectodomain proteolysis positive regulation of proteolysis biological process involved in interspecies interaction between organisms host-mediated perturbation of viral process modulation of process of another organism host-mediated activation of viral process host-mediated perturbation of symbiont process receptor-mediated endocytosis regulation of cellular component biogenesis cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly high-density lipoprotein particle assembly plasma lipoprotein particle assembly protein-lipid complex assembly very-low-density lipoprotein particle clearance phospholipid transport organophosphate ester transport phospholipid efflux behavioral fear response regulation of fear response multicellular organismal response to stress regulation of behavioral fear response regulation of behavior behavioral defense response fear response positive regulation of amyloid-beta clearance regulation of smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation muscle cell proliferation positive regulation of lipid metabolic process positive regulation of cholesterol metabolic process positive regulation of steroid metabolic process positive regulation of small molecule metabolic process positive regulation of lipid biosynthetic process learning or memory long-term memory nervous system process cognition memory regulation of tube diameter regulation of tube size blood vessel diameter maintenance vasodilation vesicle organization melanosome organization pigmentation cellular pigmentation pigment granule organization regulation of response to biotic stimulus response to biotic stimulus innate immune response regulation of immune system process response to external biotic stimulus immune response response to other organism regulation of innate immune response defense response to symbiont immune system process defense response to other organism regulation of immune response establishment of localization in cell intracellular transport high-density lipoprotein particle remodeling positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription synaptic transmission, cholinergic regulation of phospholipid transport positive regulation of phospholipid efflux regulation of phospholipid efflux positive regulation of phospholipid transport negative regulation of amyloid fibril formation negative regulation of supramolecular fiber organization	discoidal high-density lipoprotein particle protein-containing complex cellular anatomical structure extracellular region plasma lipoprotein particle high-density lipoprotein particle extracellular space lipoprotein particle protein-lipid complex membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle discoidal high-density lipoprotein particle protein-containing complex cellular anatomical structure extracellular region plasma lipoprotein particle high-density lipoprotein particle extracellular space lipoprotein particle protein-lipid complex membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane membrane intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane membrane-enclosed lumen endomembrane system intracellular organelle lumen endoplasmic reticulum lumen organelle lumen endoplasmic reticulum extracellular vesicle extracellular organelle extracellular membrane-bounded organelle chylomicron remnant chylomicron cell periphery plasma membrane extracellular matrix external encapsulating structure low-density lipoprotein particle intermediate-density lipoprotein particle triglyceride-rich plasma lipoprotein particle endocytic vesicle lumen multivesicular body, internal vesicle endosome endosomal intralumenal vesicle late endosome multivesicular body extracellular exosome synaptic cleft somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse Golgi apparatus cell body neuronal cell body pigment granule melanosome early endosome blood microparticle very-low-density lipoprotein particle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
B, D	IPR020731	Apoptosis regulator, Bcl-2, BH4 motif, conserved site	Conserved Site
B, D	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
B, D	IPR020717	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Conserved Site
B, D	IPR004725	Apoptosis regulator, Bcl-2/ BclX	Family
B, D	IPR003093	Apoptosis regulator, Bcl-2 protein, BH4	Domain
B, D	IPR002475	Bcl2-like	Family
B, D	IPR020728	Apoptosis regulator, Bcl-2, BH3 motif, conserved site	Conserved Site
B, D	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
B, D	IPR013278	Apoptosis regulator, Bcl-2	Family
B, D	IPR026298	Bcl-2 family	Family
A, C	IPR050163	Apolipoprotein A1/A4/E	Family
A, C	IPR000074	Apolipoprotein A/E	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: P10415	B-cell chronic lymphocytic leukemia follicular lymphoma diffuse large B-cell lymphoma acute myeloid leukemia Alzheimer disease synovial sarcoma malignant mesothelioma polycystic ovary syndrome retinal degeneration malignant colon neoplasm plasma cell myeloma mesenchymal chondrosarcoma male infertility osteochondrodysplasia papillary adenoma B-cell chronic lymphocytic leukemia follicular lymphoma diffuse large B-cell lymphoma acute myeloid leukemia Alzheimer disease synovial sarcoma malignant mesothelioma polycystic ovary syndrome retinal degeneration malignant colon neoplasm plasma cell myeloma mesenchymal chondrosarcoma male infertility osteochondrodysplasia papillary adenoma breast carcinoma type 2 diabetes mellitus esophageal cancer clear cell adenocarcinoma Metaplasia alcoholic liver cirrhosis contact dermatitis sarcomatoid carcinoma hypertensive disorder asthma intestinal cancer adenocarcinoma carcinoma adenoma prostate cancer follicular thyroid adenoma microcystic adenoma myocardial infarction granular cell carcinoma allergic contact dermatitis azoospermia breast cancer tubular adenocarcinoma erectile dysfunction cancer gallbladder cancer colorectal cancer multiple epiphyseal dysplasia head and neck cancer coronary artery disease neoplasm of neck hematologic disease Schwartz-Jampel syndrome depressive disorder neurodegenerative disease skin disease inborn carbohydrate metabolic disorder spondyloepiphyseal dysplasia tarda, X-linked ovarian disease intestinal neoplasm transitional cell carcinoma malignant tumor of neck ductal breast carcinoma in situ ischemia reperfusion injury bipolar disorder maturity-onset diabetes of the young plasma cell neoplasm uterine disease prostate carcinoma gallbladder neoplasm psoriasis lymphatic system disease colorectal carcinoma myeloid neoplasm glioblastoma reticulum cell sarcoma neoplasm of esophagus head and neck neoplasm cribriform carcinoma non-alcoholic fatty liver disease stomach disease osteosarcoma autoimmune disease pancreatic intraductal papillary-mucinous carcinoma benign colon neoplasm tuberculosis pituitary cancer kidney disease bipolar I disorder breast disease undifferentiated carcinoma medulloblastoma learning disability fetal alcohol spectrum disorder liver disease prostate disease lung cancer colonic neoplasm gastric cancer lymphoma neoplasm of mature B-cells schizophrenia cribriform carcinoma of breast Sjogren syndrome lymphosarcoma non-Hodgkin lymphoma idiopathic scoliosis autism spondyloepiphyseal dysplasia ovarian cancer intestinal disease toxic encephalopathy pancreatic intraductal papillary-mucinous neoplasm intracerebral hemorrhage benign connective and soft tissue neoplasm large cell medulloblastoma Melnick-Needles syndrome eye disease fetal alcohol syndrome cerebrovascular disorder lung disease gastric carcinoma connective tissue disease sarcoidosis
A, C	Pharos: P02649	Alzheimer disease sea-blue histiocyte syndrome amyloidosis hyperlipoproteinemia type 3 Alzheimer disease 2 atherosclerosis psoriasis lipoprotein glomerulopathy age-related macular degeneration hypertensive disorder cerebral amyloid angiopathy myocardial infarction familial hypercholesterolemia arteriosclerosis disorder carotid stenosis Alzheimer disease sea-blue histiocyte syndrome amyloidosis hyperlipoproteinemia type 3 Alzheimer disease 2 atherosclerosis psoriasis lipoprotein glomerulopathy age-related macular degeneration hypertensive disorder cerebral amyloid angiopathy myocardial infarction familial hypercholesterolemia arteriosclerosis disorder carotid stenosis Alzheimer disease 4 familial hyperlipidemia obesity disorder Down syndrome Wilson disease Cognition Disorders Lewy body dementia tubular adenocarcinoma adenocarcinoma proteinuria carotid artery disease granular cell carcinoma hearing loss disorder type 2 diabetes mellitus age related macular degeneration 1 schizophrenia cerebrovascular disorder kidney failure coronary artery disease heart disease visual epilepsy cardiovascular disease mercury poisoning relapsing-remitting multiple sclerosis multiple sclerosis inborn errors of metabolism nasopharyngeal carcinoma internal carotid artery stenosis neurodegenerative disease Finnish type amyloidosis gelatinous drop-like corneal dystrophy large cell medulloblastoma AA amyloidosis oligodendroglioma glioblastoma cribriform carcinoma pancreatic ductal adenocarcinoma head and neck cancer dementia acquired metabolic disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia vascular dementia lung benign neoplasm atopic eczema wet macular degeneration malignant ependymoma adrenal cortex carcinoma medullary thyroid gland carcinoma metabolic syndrome X esophageal adenocarcinoma retinal degeneration cerebral amyloid angiopathy, APP-related inherited lipid metabolism disorder nephrosclerosis interstitial cystitis non-alcoholic fatty liver disease aortic aneurysm juvenile dermatomyositis lattice corneal dystrophy abdominal aortic aneurysm osteosarcoma cribriform carcinoma of breast ABri amyloidosis pancreatic intraductal papillary-mucinous carcinoma astrocytic tumor Parkinson disease drug-induced liver injury hypercholesterolemia, autosomal dominant, type B bipolar disorder malignant mesothelioma hyperlipidemia medulloblastoma pustulosis palmaris et plantaris inborn carbohydrate metabolic disorder myopathy Alzheimer disease type 1 chronic obstructive pulmonary disease invasive ductal breast carcinoma gastric carcinoma Sjogren syndrome Creutzfeldt Jacob disease ovarian cancer delirium pancreatic intraductal papillary-mucinous neoplasm ulcerative colitis ADan amyloidosis macular degeneration Duchenne muscular dystrophy primary cutaneous amyloidosis pulmonary emphysema alcohol abuse

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