7W2J

Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF05199	e7w2jA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: PF05199	ECOD (1.6)
D	PF05199	e7w2jD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: PF05199	ECOD (1.6)
B	PF12318	e7w2jB1	A: alpha arrays	X: Twin-arginine translocation pathway signal (From Topology)	H: Twin-arginine translocation pathway signal (From Topology)	T: Twin-arginine translocation pathway signal	F: PF12318	ECOD (1.6)
E	PF12318	e7w2jE1	A: alpha arrays	X: Twin-arginine translocation pathway signal (From Topology)	H: Twin-arginine translocation pathway signal (From Topology)	T: Twin-arginine translocation pathway signal	F: PF12318	ECOD (1.6)
C	PF00034	e7w2jC1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
F	PF00034	e7w2jF1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D	PF00732	GMC oxidoreductase (GMC_oxred_N)	GMC oxidoreductase	This family of proteins bind FAD as a cofactor.	Domain
A, D	PF05199	GMC oxidoreductase (GMC_oxred_C)	GMC oxidoreductase	This domain found associated with Pfam:PF00732.	Domain
A, D	PF13450	NAD(P)-binding Rossmann-like domain (NAD_binding_8)	NAD(P)-binding Rossmann-like domain	-	Domain
B, E	PF12318	Membrane bound FAD containing D-sorbitol dehydrogenase (FAD-SLDH)	Membrane bound FAD containing D-sorbitol dehydrogenase	-	Family
C, F	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	Fructose dehydrogenase large subunit	oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor catalytic activity fructose 5-dehydrogenase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process organic substance metabolic process hexose metabolic process small molecule metabolic process metabolic process primary metabolic process fructose metabolic process	cell periphery plasma membrane membrane cellular anatomical entity
B, E	Fructose dehydrogenase small subunit	-	monosaccharide metabolic process carbohydrate metabolic process organic substance metabolic process hexose metabolic process small molecule metabolic process metabolic process primary metabolic process fructose metabolic process	cell periphery plasma membrane membrane cellular anatomical entity
C, F	Fructose dehydrogenase cytochrome subunit	oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process organic substance metabolic process hexose metabolic process small molecule metabolic process metabolic process primary metabolic process fructose metabolic process	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D	IPR000172	Glucose-methanol-choline oxidoreductase, N-terminal	Domain
A, D	IPR007867	Glucose-methanol-choline oxidoreductase, C-terminal	Domain
A, D	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
B, E	IPR024651	FAD-containing D-sorbitol dehydrogenase small subunit	Family
C, F	IPR014353	Membrane-bound alcohol dehydrogenase, cytochrome c subunit	Family
C, F	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
C, F	IPR009056	Cytochrome c-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.