X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1CP3 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.6352.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.858α = 90
b = 89.043β = 90
c = 96.531γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV2001-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.41295.60.1046.823665

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1CP32.4202009820098223893.870.246980.246980.241130.29947RANDOM25.794
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.143.26-2.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.652
r_scangle_it5.348
r_mcangle_it5.066
r_scbond_it3.657
r_dihedral_angle_1_deg3.502
r_mcbond_it3.234
r_angle_refined_deg1.411
r_nbd_refined0.261
r_symmetry_vdw_refined0.218
r_xyhbond_nbd_refined0.157
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.652
r_scangle_it5.348
r_mcangle_it5.066
r_scbond_it3.657
r_dihedral_angle_1_deg3.502
r_mcbond_it3.234
r_angle_refined_deg1.411
r_nbd_refined0.261
r_symmetry_vdw_refined0.218
r_xyhbond_nbd_refined0.157
r_chiral_restr0.094
r_symmetry_hbond_refined0.077
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3854
Nucleic Acid Atoms
Solvent Atoms100
Heterogen Atoms70

Software

Software
Software NamePurpose
d*TREKdata scaling
d*TREKdata reduction
AMoREphasing
REFMACrefinement