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Caspase-3 tethered to irreversible inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CP3
Crystallization Crystal Properties Matthews coefficient Solvent content 2.28 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.45 α = 90 b = 70.952 β = 136.42 c = 95.86 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2001-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.080 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 98.9 0.053 12.2 62041 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CP3 1.7 20 58906 58906 3135 98.83 0.15266 0.15266 0.15102 0.1501 0.18335 0.1825 RANDOM 16.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.64 -0.02 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.799 r_scangle_it 6.322 r_dihedral_angle_1_deg 5.152 r_mcangle_it 4.363 r_scbond_it 4.308 r_mcbond_it 2.74 r_angle_refined_deg 1.735 r_nbd_refined 0.237 r_symmetry_hbond_refined 0.186 r_symmetry_vdw_refined 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.799 r_scangle_it 6.322 r_dihedral_angle_1_deg 5.152 r_mcangle_it 4.363 r_scbond_it 4.308 r_mcbond_it 2.74 r_angle_refined_deg 1.735 r_nbd_refined 0.237 r_symmetry_hbond_refined 0.186 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.154 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3880 Nucleic Acid Atoms Solvent Atoms 587 Heterogen Atoms 64
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling