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CASPASE-7 IN COMPLEX WITH FICA ALLOSTERIC INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K88 PDB ENTRY 1K88
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 277 citrate, lithium sulfate, sodium chloride, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.9 68.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.22 α = 90 b = 90.22 β = 90 c = 186.621 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 beamline 9-1 standard 2003-01-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.8856 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 21.7 99.3 0.076 7.89 5.7 18022 75.82
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.08 99.9 0.46 1.4 5.8 1286
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1K88 3 10 17536 16639 897 99.19 0.22362 0.2236 0.2211 0.2151 0.27327 0.2623 RANDOM 56.095
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.45 1.73 3.45 -5.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.99 r_mcangle_it 3.829 r_scangle_it 3.503 r_scbond_it 2.226 r_mcbond_it 2.16 r_angle_refined_deg 1.297 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.217 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.99 r_mcangle_it 3.829 r_scangle_it 3.503 r_scbond_it 2.226 r_mcbond_it 2.16 r_angle_refined_deg 1.297 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.217 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3164 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction AMoRE phasing