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Human Inositol (1,4,5)-trisphosphate 3-kinase complexed with Mn2+/ADP/Ins(1,3,4,5)P4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.82 M NA CITRATE, 0.1 M NACL, 0.1 M TRIS PH 8.
Crystal Properties Matthews coefficient Solvent content 2.6 47.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.054 α = 90 b = 97.411 β = 90 c = 190.844 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2003-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 49.51 97.2 0.052 8.5537 6.83 48642 2 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.04 98.2 0.21 3.6 6.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.94 48.8 46068 2453 96.9 0.228 0.226 0.267 0.2862 RANDOM 29.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 -0.08 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.946 r_scangle_it 3.999 r_scbond_it 2.645 r_mcangle_it 1.866 r_angle_refined_deg 1.751 r_mcbond_it 1.088 r_angle_other_deg 0.981 r_symmetry_vdw_other 0.307 r_nbd_other 0.261 r_nbd_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.946 r_scangle_it 3.999 r_scbond_it 2.645 r_mcangle_it 1.866 r_angle_refined_deg 1.751 r_mcbond_it 1.088 r_angle_other_deg 0.981 r_symmetry_vdw_other 0.307 r_nbd_other 0.261 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.195 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.113 r_nbtor_other 0.086 r_bond_refined_d 0.019 r_bond_other_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4138 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 127
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling