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Ensemble refinement of the protein crystal structure of cysteine dioxygenase type I from Mus musculus Mm.241056
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ATF PDB entry 2ATF
Crystallization Crystal Properties Matthews coefficient Solvent content 2.2 43.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.55 α = 90 b = 57.55 β = 90 c = 122.076 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 2ATF 1.75 33.86 21463 1101 99.9 0.159 0.159 0.1746 0.211 0.2252 RANDOM 17.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.13 -0.26
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.4 c_scangle_it 2.79 c_scbond_it 2.01 c_mcangle_it 1.9 c_angle_deg 1.8 c_mcbond_it 1.42 c_improper_angle_d 1.09 c_bond_d 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1512 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 5
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing