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HSP90 inhibitors and drugs from fragment and virtual screening
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WI1 PDB ENTRY 2WI1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.65 53.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.843 α = 90 b = 90.908 β = 90 c = 99.395 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU R-AXIS IV OSMIC BLUE MIRRORS 2003-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 67.42 98 0.11 10 2.5 12866 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 99.8 0.27 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WI1 2.3 67.42 12866 686 98.03 0.21592 0.21231 0.2074 0.28338 0.2749 RANDOM 32.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 1.2 -1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.613 r_dihedral_angle_4_deg 19.869 r_dihedral_angle_3_deg 17.514 r_dihedral_angle_1_deg 6.939 r_scangle_it 4.527 r_scbond_it 2.846 r_angle_refined_deg 1.903 r_mcangle_it 1.765 r_mcbond_it 0.948 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.613 r_dihedral_angle_4_deg 19.869 r_dihedral_angle_3_deg 17.514 r_dihedral_angle_1_deg 6.939 r_scangle_it 4.527 r_scbond_it 2.846 r_angle_refined_deg 1.903 r_mcangle_it 1.765 r_mcbond_it 0.948 r_chiral_restr 0.132 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1637 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling AMoRE phasing