3EDA

Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [150 min]

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1MBC

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	batch	6	293	2.4M Ammonium sulfate, 10mM TrisHCl, 100mM Sodium phosphate, pH 6.0, batch, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
1.87	34.31

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 34.329	α = 90
b = 30.625	β = 105.36
c = 63.664	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MAR CCD 165 mm		2008-02-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NW14A	0.827	Photon Factory	AR-NW14A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.21	50	93.2	0.046	11.2	3.6		36736		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.21	1.25	59		0.399		2.4	2291

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1MBC	1.21	17.17	36721	1844	93.59	0.156	0.153	0.211	RANDOM	15.506

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.02		-0.02	-0.01		-0.03

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.17
r_dihedral_angle_4_deg	13.698
r_dihedral_angle_3_deg	13.113
r_sphericity_free	10.505
r_scangle_it	6.236
r_sphericity_bonded	6.156
r_dihedral_angle_1_deg	5.218
r_scbond_it	4.673
r_mcangle_it	3.378
r_rigid_bond_restr	3.032
r_mcbond_it	2.456
r_angle_refined_deg	2.063
r_nbtor_refined	0.322
r_nbd_refined	0.301
r_symmetry_vdw_refined	0.193
r_metal_ion_refined	0.182
r_symmetry_hbond_refined	0.17
r_chiral_restr	0.14
r_xyhbond_nbd_refined	0.131
r_bond_refined_d	0.023
r_gen_planes_refined	0.013

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1217
Nucleic Acid Atoms
Solvent Atoms	170
Heterogen Atoms	55

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling