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Crystal structure of full length centaurin alpha-1 bound with the FHA domain of KIF13B (CAPRI target)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other unpublished model of human centaurin alpha-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 291 1.2M lithium sulfate, 0.1M Sodium citrate, 0.5M ammonium sulfate, pH 6.0, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.65 58.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.632 α = 90 b = 115.632 β = 90 c = 189.291 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99.7 0.08 7.1 57550
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.3 0.739 5.3 5574
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT unpublished model of human centaurin alpha-1 2.3 19.865 57396 2023 99.68 0.232 0.231 0.2332 0.272 0.2707 thin shells (sftools) 36.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.027 0.027 -0.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.332 r_dihedral_angle_4_deg 15.438 r_dihedral_angle_3_deg 14.237 r_dihedral_angle_1_deg 5.861 r_mcangle_it 2.482 r_scangle_it 2.236 r_angle_other_deg 1.579 r_mcbond_it 1.483 r_scbond_it 1.443 r_angle_refined_deg 1.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.332 r_dihedral_angle_4_deg 15.438 r_dihedral_angle_3_deg 14.237 r_dihedral_angle_1_deg 5.861 r_mcangle_it 2.482 r_scangle_it 2.236 r_angle_other_deg 1.579 r_mcbond_it 1.483 r_scbond_it 1.443 r_angle_refined_deg 1.259 r_mcbond_other 0.289 r_chiral_restr 0.07 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7157 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 39
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling