X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1N8J 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52911.6 M ammonium sulfate, 100 mM MES pH 6.5, 5% Dioxane
Crystal Properties
Matthews coefficientSolvent content
3.1561

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.494α = 90
b = 135.654β = 111.22
c = 106.489γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152015-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL13B10.999999NSRRCBL13B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.15092.98.93.144808
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.21922.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1N8J3.15040616214788.530.250330.248580.28366RANDOM81.836
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.972.24-0.99-1.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.484
r_dihedral_angle_3_deg15.149
r_dihedral_angle_4_deg14.409
r_dihedral_angle_1_deg4.578
r_long_range_B_refined2.769
r_long_range_B_other2.768
r_angle_refined_deg0.946
r_angle_other_deg0.816
r_mcangle_it0.722
r_mcangle_other0.722
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.484
r_dihedral_angle_3_deg15.149
r_dihedral_angle_4_deg14.409
r_dihedral_angle_1_deg4.578
r_long_range_B_refined2.769
r_long_range_B_other2.768
r_angle_refined_deg0.946
r_angle_other_deg0.816
r_mcangle_it0.722
r_mcangle_other0.722
r_scangle_other0.466
r_mcbond_it0.394
r_mcbond_other0.394
r_scbond_it0.25
r_scbond_other0.24
r_chiral_restr0.054
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13005
Nucleic Acid Atoms
Solvent Atoms19
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing