X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4XMR 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP298PEG 3350, sodium citrate and ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
2.550.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.565α = 90
b = 137.618β = 94.72
c = 49.118γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2017-11-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX10.9537Australian SynchrotronMX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3246.1297.50.02615.93.5128662
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.321.340.1524.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4xmr1.3246.12122139647197.410.12570.1240.1562RANDOM20.369
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1-0.13-0.48-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free35.533
r_dihedral_angle_2_deg35.016
r_sphericity_bonded14.438
r_dihedral_angle_4_deg12.406
r_dihedral_angle_3_deg11.862
r_dihedral_angle_1_deg6.407
r_rigid_bond_restr6.312
r_angle_refined_deg1.485
r_angle_other_deg1.073
r_chiral_restr0.109
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free35.533
r_dihedral_angle_2_deg35.016
r_sphericity_bonded14.438
r_dihedral_angle_4_deg12.406
r_dihedral_angle_3_deg11.862
r_dihedral_angle_1_deg6.407
r_rigid_bond_restr6.312
r_angle_refined_deg1.485
r_angle_other_deg1.073
r_chiral_restr0.109
r_gen_planes_refined0.015
r_bond_refined_d0.012
r_gen_planes_other0.007
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3966
Nucleic Acid Atoms
Solvent Atoms799
Heterogen Atoms36

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
PHASERphasing