SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

SQD is a Ligand Of Interest in 3KZI designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3KZI_SQD_D_361Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3KZI_SQD_D_361Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3KZI_SQD_D_361Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3KZI_SQD_D_361 13% 4% 0.294 0.8712.57 2.94 19 159080%1
3KZI_SQD_C_475 2% 5% 0.426 0.7432.59 2.75 26 18 8094%1
3KZI_SQD_L_213 1% 5% 0.584 0.7272.6 2.88 24 19 2087%1
3KZI_SQD_F_224 0% 4% 0.805 0.532 2.65 2.85 21 19 0083%1
5V2C_SQD_a_413 94% 21% 0.075 0.9761.12 2.14 4 1200100%1
5GTI_SQD_A_409 91% 29% 0.066 0.950.98 1.84 3 1300100%1
5WS6_SQD_A_411 87% 32% 0.084 0.9540.88 1.78 2 1200100%1
6DHE_SQD_A_412 78% 20% 0.113 0.9611.05 2.27 5 140096%1
8IRC_SQD_a_411 77% 29% 0.119 0.960.96 1.83 3 1300100%1
8IR5_SQD_a_411 76% 31% 0.123 0.9580.95 1.77 3 1300100%1