5NDF
UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5NDF designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5NDF_UDP_A_602 | 97% | 33% | 0.071 | 0.984 | 1.07 | 1.58 | 1 | 7 | 0 | 0 | 100% | 1 |
5NDF_UDP_E_602 | 95% | 29% | 0.073 | 0.979 | 1.35 | 1.47 | 6 | 5 | 0 | 0 | 100% | 1 |
5NDF_UDP_B_602 | 89% | 35% | 0.094 | 0.972 | 1.06 | 1.48 | 1 | 7 | 0 | 0 | 100% | 1 |
5NDF_UDP_C_602 | 86% | 24% | 0.096 | 0.965 | 1.14 | 1.96 | 2 | 8 | 0 | 0 | 100% | 1 |
5NDF_UDP_D_602 | 82% | 24% | 0.104 | 0.958 | 1.28 | 1.8 | 3 | 8 | 0 | 0 | 100% | 1 |
5NDF_UDP_F_602 | 63% | 23% | 0.138 | 0.934 | 1.25 | 1.89 | 4 | 9 | 0 | 0 | 100% | 1 |
6E7I_UDP_A_601 | 99% | 27% | 0.053 | 0.987 | 1.4 | 1.55 | 4 | 7 | 0 | 0 | 100% | 1 |
5AJP_UDP_A_1570 | 98% | 36% | 0.056 | 0.982 | 1.01 | 1.49 | 1 | 4 | 0 | 0 | 100% | 1 |
2FFU_UDP_A_601 | 89% | 8% | 0.084 | 0.962 | 2.57 | 2.07 | 6 | 10 | 0 | 0 | 100% | 1 |
4D0T_UDP_C_1571 | 88% | 32% | 0.107 | 0.984 | 1.17 | 1.52 | 3 | 8 | 0 | 0 | 100% | 1 |
5FV9_UDP_A_1570 | 77% | 20% | 0.126 | 0.967 | 1.52 | 1.86 | 4 | 9 | 3 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |