UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 5NDF designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5NDF_UDP_A_602 97% 33% 0.071 0.9841.07 1.58 1 700100%1
5NDF_UDP_E_602 95% 29% 0.073 0.9791.35 1.47 6 500100%1
5NDF_UDP_B_602 89% 35% 0.094 0.9721.06 1.48 1 700100%1
5NDF_UDP_C_602 86% 24% 0.096 0.9651.14 1.96 2 800100%1
5NDF_UDP_D_602 82% 24% 0.104 0.9581.28 1.8 3 800100%1
5NDF_UDP_F_602 63% 23% 0.138 0.9341.25 1.89 4 900100%1
6E7I_UDP_A_601 99% 27% 0.053 0.9871.4 1.55 4 700100%1
5AJP_UDP_A_1570 98% 36% 0.056 0.9821.01 1.49 1 400100%1
2FFU_UDP_A_601 89% 8% 0.084 0.9622.57 2.07 6 1000100%1
4D0T_UDP_C_1571 88% 32% 0.107 0.9841.17 1.52 3 800100%1
5FV9_UDP_A_1570 77% 20% 0.126 0.9671.52 1.86 4 930100%1
8X3Q_UDP_C_401 100% 3% 0.015 0.9983.32 2.69 13 1300100%1
8X3U_UDP_B_401 100% 3% 0.012 0.9993.31 2.68 13 1320100%1
8VH8_UDP_C_704 100% 62% 0.032 0.9950.55 0.9 - 100100%1
4GYW_UDP_C_1101 100% 37% 0.037 0.9881.03 1.45 2 400100%1
2IV7_UDP_A_1372 100% 40% 0.035 0.9840.85 1.49 - 400100%1