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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Horn-Ghetko, D."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (9)
	Legionella pneumophila (1)

Taxonomy

	Eukaryota (9)
	Bacteria (1)

Experimental Method

	ELECTRON MICROSCOPY (8)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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1 to 9 of 9 Structures

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5O74 \| pdb_00005o74	Download File View File

Crystal structure of human Rab1b covalently bound to the GEF domain of DrrA/SidM from Legionella pneumophila in the presence of GDP

Cigler, M., Mueller, T., Horn-Ghetko, D., von Wrisberg, M.K., Fottner, M., Goody, R.S., Itzen, A., Mueller, M.P., Lang, K.

(2017) Angew Chem Int Ed Engl 56: 15737-15741

Released	2017-10-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Legionella pneumophila
Macromolecule	Multifunctional virulence effector protein DrrA (protein) Ras-related protein Rab-1B (protein)
Unique Ligands	GDP

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7B5L \| pdb_00007b5l	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 12
Unique Ligands	SY8, ZN

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7B5M \| pdb_00007b5m	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-17
Method	ELECTRON MICROSCOPY 3.91 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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7B5N \| pdb_00007b5n	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1.

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	SY8, ZN

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7B5R \| pdb_00007b5r	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7

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7B5S \| pdb_00007b5s	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-ARIH1 Ariadne. Transition State 1

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Cullin-1 (protein) E3 ubiquitin-protein ligase ARIH1 (protein) E3 ubiquitin-protein ligase RBX1 (protein)
Unique Ligands	ZN

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8Q7E \| pdb_00008q7e	Download File View File

Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly

Hopf, L.V.M., Horn-Ghetko, D., Schulman, B.A.

(2024) Nat Struct Mol Biol 31: 1083-1094

Released	2024-04-17
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens
Macromolecule	Cullin-9 (protein) E3 ubiquitin-protein ligase RBX1 (protein)

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8Q7H \| pdb_00008q7h	Download File View File

Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer

Hopf, L.V.M., Horn-Ghetko, D., Schulman, B.A.

(2024) Nat Struct Mol Biol 31: 1083-1094

Released	2024-04-17
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Cullin-9 (protein) E3 ubiquitin-protein ligase RBX1 (protein) NEDD8 (protein) Unknown (protein)
Unique Ligands	ZN

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8RHZ \| pdb_00008rhz	Download File View File

Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer

Hopf, L.V.M., Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2024) Nat Struct Mol Biol 31: 1083-1094

Released	2024-04-17
Method	ELECTRON MICROSCOPY 3.37 Å
Organisms	Homo sapiens
Macromolecule	Cullin-9 (protein) E3 ubiquitin-protein ligase RBX1 (protein)
Unique Ligands	ZN

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5O74 | pdb_00005o74

Crystal structure of human Rab1b covalently bound to the GEF domain of DrrA/SidM from Legionella pneumophila in the presence of GDP

7B5L | pdb_00007b5l

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1

7B5M | pdb_00007b5m

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2

7B5N | pdb_00007b5n

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1.

7B5R | pdb_00007b5r

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27

7B5S | pdb_00007b5s

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-ARIH1 Ariadne. Transition State 1

8Q7E | pdb_00008q7e

Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly

8Q7H | pdb_00008q7h

Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer

8RHZ | pdb_00008rhz

Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5O74 | pdb_00005o74

7B5L | pdb_00007b5l

7B5M | pdb_00007b5m

7B5N | pdb_00007b5n

7B5R | pdb_00007b5r

7B5S | pdb_00007b5s

8Q7E | pdb_00008q7e

8Q7H | pdb_00008q7h

8RHZ | pdb_00008rhz