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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bernardini, J.P."

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

	Homo sapiens (38)
	Pediculus humanus corporis (8)
	Mus musculus (3)
	Aequorea victoria (2)
	Severe acute respiratory syndrome coronavirus 2 (2)

Taxonomy

	Eukaryota (47)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (40)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

Protein (47)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (14)
	2.0 - 2.5 (16)
	2.5 - 3.0 (10)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (19)
	2020 - 2024 (18)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (2)

Membrane Protein Annotation

	mpstruc (6)
	OPM (1)

Symmetry Type

	Cyclic (35)
	Asymmetric (11)
	Dihedral (2)

SCOP Classification

	Membrane and cell surface proteins and peptides (11)
	Alpha and beta proteins (a+b) (4)
	Artifacts (5)

AllSelected

1 to 25 of 47 Structures

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2Y6W \| pdb_00002y6w	Download File View File

Structure of a Bcl-w dimer

Lee, E.F., Evangelista, M., Pettikiriarachchi, A., Dogovski, C., Perugini, M.A., Colman, P.M., Fairlie, W.D.

(2011) Structure 19: 1467

Released	2011-10-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BCL-2-LIKE PROTEIN 2 (protein)
Unique Ligands	PEG, PGE

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4BD2 \| pdb_00004bd2	Download File View File

Bax domain swapped dimer in complex with BidBH3

Czabotar, P.E., Westphal, D., Adams, J.M., Colman, P.M.

(2013) Cell 152: 519

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.206 Å
Organisms	Homo sapiens
Macromolecule	APOPTOSIS REGULATOR BAX (protein) BH3-INTERACTING DOMAIN DEATH AGONIST (protein)

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4BD6 \| pdb_00004bd6	Download File View File

Bax domain swapped dimer in complex with BaxBH3

Czabotar, P.E., Westphal, D., Adams, J.M., Colman, P.M.

(2013) Cell 152: 519

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.494 Å
Organisms	Homo sapiens
Macromolecule	APOPTOSIS REGULATOR BAX (protein)

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4BD7 \| pdb_00004bd7	Download File View File

Bax domain swapped dimer induced by octylmaltoside

Czabotar, P.E., Westphal, D., Adams, J.M., Colman, P.M.

(2013) Cell 152: 519

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Homo sapiens
Macromolecule	APOPTOSIS REGULATOR BAX (protein)
Unique Ligands	CL, PR

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4BD8 \| pdb_00004bd8	Download File View File

Bax domain swapped dimer induced by BimBH3 with CHAPS

Czabotar, P.E., Westphal, D., Adams, J.M., Colman, P.M.

(2013) Cell 152: 519

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	APOPTOSIS REGULATOR BAX (protein)
Unique Ligands	EDO, PR

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4BDU \| pdb_00004bdu	Download File View File

Bax BH3-in-Groove dimer (GFP)

Czabotar, P.E., Colman, P.M.

(2013) Cell 152: 519

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.998 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	GREEN FLUORESCENT PROTEIN, APOPTOSIS REGULATOR BAX (protein)

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4CIM \| pdb_00004cim	Download File View File

Complex of a Bcl-w BH3 mutant with a BH3 domain

Colman, P.M., Lee, E.F., Fairlie, W.D.

(2014) J Biological Chem 289: 36001

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	BCL-2-LIKE PROTEIN 2 (protein)
Unique Ligands	EDO

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4CIN \| pdb_00004cin	Download File View File

Complex of Bcl-xL with its BH3 domain

Colman, P.M., Lee, E.F., Fairlie, W.D.

(2014) J Biological Chem 289: 36001

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.693 Å
Organisms	Homo sapiens
Macromolecule	BCL-2-LIKE PROTEIN 1 (protein)
Unique Ligands	CA, EDO, EPE

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4U2U \| pdb_00004u2u	Download File View File

Bak domain swapped dimer induced by BidBH3 with CHAPS

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2014) Mol Cell 55: 938-946

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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4U2V \| pdb_00004u2v	Download File View File

Bak BH3-in-Groove dimer (GFP)

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2014) Mol Cell 55: 938-946

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Green fluorescent protein,Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	CAC, MPD

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4ZIE \| pdb_00004zie	Download File View File

Crystal Structure of core/latch dimer of Bax in complex with BimBH3

Krishna Kumar, K., Robin, A.Y., Westphal, D., Wardak, A.Z., Thompson, G.V., Dewson, G., Colman, P.M., Czabotar, P.E.

(2015) Cell Death Dis 6: e1809-e1809

Released	2015-07-22
Method	X-RAY DIFFRACTION 1.797 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator BAX (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO

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4ZIF \| pdb_00004zif	Download File View File

Crystal Structure of core/latch dimer of Bax in complex with BimBH3mini

Robin, A.Y., Krishna Kumar, K., Westphal, D., Wardak, A.Z., Thompson, G.V., Dewson, G., Colman, P.M., Czabotar, P.E.

(2015) Cell Death Dis 6: e1809-e1809

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator BAX (protein) Bcl-2-like protein 11 (protein)

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4ZIG \| pdb_00004zig	Download File View File

Crystal Structure of core/latch dimer of Bax in complex with BidBH3mini

Robin, A.Y., Krishna Kumar, K., Westphal, D., Wardak, A.Z., Thompson, G.V., Dewson, G., Colman, P.M., Czabotar, P.E.

(2015) Cell Death Dis 6: e1809-e1809

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator BAX (protein) BH3-interacting domain death agonist (protein)

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4ZIH \| pdb_00004zih	Download File View File

Crystal Structure of core/latch dimer of Bax in complex with BimBH3mini

Robin, A.Y., Krishna Kumar, K., Westphal, D., Wardak, A.Z., Thompson, G.V., Dewson, G., Colman, P.M., Czabotar, P.E.

(2015) Cell Death Dis 6: e1809-e1809

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator BAX (protein) Bcl-2-like protein 11 (protein)

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4ZII \| pdb_00004zii	Download File View File

Crystal Structure of core/latch dimer of BaxI66A in complex with BidBH3

Czabotar, P.E., Robin, A.Y., Krishna Kumar, K., Westphal, D., Wardak, A.Z., Thompson, G.V., Dewson, G., Colman, P.M.

(2015) Cell Death Dis 6: e1809-e1809

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.191 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator BAX (protein) BH3-interacting domain death agonist (protein)
Unique Ligands	EDO

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5FMI \| pdb_00005fmi	Download File View File

Human Bak Q77L

Fairlie, W.D., Lee, E.F., Smith, B.J.

(2016) Genes Dev 30: 1240

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.491 Å
Organisms	Homo sapiens
Macromolecule	BCL-2 HOMOLOGOUS ANTAGONIST/KILLER (protein)
Unique Ligands	ZN

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5FMJ \| pdb_00005fmj	Download File View File

Bcl-xL with mouse Bak BH3 Q75L complex

Fairlie, W.D., Lee, E.F., Smith, B.J.

(2016) Genes Dev 30: 1240

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BAK1 PROTEIN (protein) BCL-2-LIKE PROTEIN 1 (protein)
Unique Ligands	EDO

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5FMK \| pdb_00005fmk	Download File View File

Bcl-xL with Bak BH3 complex

Fairlie, W.D., Lee, E.F., Smith, B.J., Czabotar, P.E., Colman, P.M.

(2016) Genes Dev 30: 1240

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.731 Å
Organisms	Homo sapiens
Macromolecule	BCL-2 HOMOLOGOUS ANTAGONIST/KILLER (protein) BCL-XL (protein)
Unique Ligands	GOL

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5VWV \| pdb_00005vwv	Download File View File

Bak core latch dimer in complex with Bim-BH3 - Cubic

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	CL, EDO, GOL, TFA

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5VWW \| pdb_00005vww	Download File View File

Bak core latch dimer in complex with Bim-RT - Tetragonal

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	BR, IMD, MPD

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5VWX \| pdb_00005vwx	Download File View File

Bak core latch dimer in complex with Bim-h0-h3Glt

Brouwer, J.M., Lan, P., Lessene, G., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.489 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO

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5VWY \| pdb_00005vwy	Download File View File

Bak core latch dimer in complex with Bim-h3Pc-RT

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.555 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	PO4

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5VWZ \| pdb_00005vwz	Download File View File

Bak in complex with Bim-h3Pc

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.622 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	1PG, NH4

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5VX0 \| pdb_00005vx0	Download File View File

Bak in complex with Bim-h3Glg

Brouwer, J.M., Lan, P., Lessene, G., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO, MG