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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "CDN1"

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (33)
	synthetic construct (4)
	Aequorea victoria (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (33)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (29)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (11)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (7)
	2020 - 2024 (23)

Membrane Protein Annotation

	mpstruc (8)
	OPM (2)
	PDBTM (2)
	MemProtMD (1)

Symmetry Type

	Cyclic (19)
	Asymmetric (16)

SCOP Classification

	Artifacts (2)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 33 Structures

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2M5B \| pdb_00002m5b	Download File View File

The NMR structure of the BID-BAK complex

Moldoveanu, T., Grace, C.R., Kriwacki, R.W., Green, D.R.

(2013) Nat Struct Mol Biol 20: 589-597

Released	2013-04-17
Method	SOLUTION NMR
Organisms	Homo sapiens synthetic construct
Macromolecule	Bcl-2 homologous antagonist/killer (protein) human_BID_BH3_SAHB (protein)

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4U2U \| pdb_00004u2u	Download File View File

Bak domain swapped dimer induced by BidBH3 with CHAPS

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2014) Mol Cell 55: 938-946

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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4U2V \| pdb_00004u2v	Download File View File

Bak BH3-in-Groove dimer (GFP)

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2014) Mol Cell 55: 938-946

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Green fluorescent protein,Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	CAC, MPD

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5VWV \| pdb_00005vwv	Download File View File

Bak core latch dimer in complex with Bim-BH3 - Cubic

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	CL, EDO, GOL, TFA

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5VWW \| pdb_00005vww	Download File View File

Bak core latch dimer in complex with Bim-RT - Tetragonal

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	BR, IMD, MPD

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5VWX \| pdb_00005vwx	Download File View File

Bak core latch dimer in complex with Bim-h0-h3Glt

Brouwer, J.M., Lan, P., Lessene, G., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.489 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO

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5VWY \| pdb_00005vwy	Download File View File

Bak core latch dimer in complex with Bim-h3Pc-RT

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.555 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	PO4

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5VWZ \| pdb_00005vwz	Download File View File

Bak in complex with Bim-h3Pc

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.622 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	1PG, NH4

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5VX0 \| pdb_00005vx0	Download File View File

Bak in complex with Bim-h3Glg

Brouwer, J.M., Lan, P., Lessene, G., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO, MG

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5VX1 \| pdb_00005vx1	Download File View File

Bak L100A

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.224 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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6ODH \| pdb_00006odh	Download File View File

BH3 domain swapped dimer of a BAK fragment

Liu, L.-K.

To be published

Released	2020-10-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	EPE, PEG, SO4

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6UXM \| pdb_00006uxm	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with E. coli lipid

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	PEE

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6UXN \| pdb_00006uxn	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	8SP, GOL, SO4

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6UXO \| pdb_00006uxo	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	ACT, EDO, LMT, SO4

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6UXP \| pdb_00006uxp	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.492 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	GOL, PG8

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6UXQ \| pdb_00006uxq	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with POPC and C8E4

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.696 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	C8E, EDO, LBN, SO4

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6UXR \| pdb_00006uxr	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with LysoPC

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	K6G, PG4, PGE

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7K02 \| pdb_00007k02	Download File View File

The crystal structure of a BAK dimer activated by detergent

Birkinshaw, R.W., Czabotar, P.E.

(2021) Mol Cell 81: 2123

Released	2021-03-31
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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7LK4 \| pdb_00007lk4	Download File View File

Crystal structure of BAK L100A in complex with activating antibody fragments

Robin, Y.A., Colman, P.M.

(2022) Cell Death Differ 29: 1757-1768

Released	2022-02-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	7D10 antibody VH fragment (protein) 7D10 antibody VL fragment (protein) Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	MPD

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7M5A \| pdb_00007m5a	Download File View File

Crystal Structure of human BAK in complex with W3W5_BID

Singh, G., Aggarwal, A., Moldoveanu, T.

(2022) Nat Commun 13: 250-250

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	BH3-interacting domain death agonist p15 (protein) Bcl-2 homologous antagonist/killer (protein)

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7M5B \| pdb_00007m5b	Download File View File

Crystal Structure of human BAK in complex with M3W5_BID

Singh, G., Aggarwal, A., Moldoveanu, T.

(2022) Nat Commun 13: 250-250

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	BH3-interacting domain death agonist p15 (protein) Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	CU

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7M5C \| pdb_00007m5c	Download File View File

Crystal Structure of human BAK in complex with WT BAK BH3 peptide

Singh, G., Aggarwal, A., Moldoveanu, T.

(2022) Nat Commun 13: 250-250

Released	2022-01-12
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	CU, SO4

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7OFM \| pdb_00007ofm	Download File View File

NMR structure of the Bak transmembrane helix in DPC micelles

Sperl, L.E., Hagn, F.

(2021) EMBO J 40: e107159-e107159

Released	2021-06-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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7OFO \| pdb_00007ofo	Download File View File

NMR structure of the Bak transmembrane helix in lipid nanodiscs

Sperl, L.E., Hagn, F.

(2021) EMBO J 40: e107159-e107159

Released	2021-06-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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8CZF \| pdb_00008czf	Download File View File

Human BAK in complex with the dF2 peptide

Aguilar, F., Keating, A.E.

(2023) Structure 31: 265-281.e7

Released	2023-01-11
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Bcl-2 homologous antagonist/killer (protein) DF2 peptide (protein)

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2M5B | pdb_00002m5b

4U2U | pdb_00004u2u

4U2V | pdb_00004u2v

5VWV | pdb_00005vwv

5VWW | pdb_00005vww

5VWX | pdb_00005vwx

5VWY | pdb_00005vwy

5VWZ | pdb_00005vwz

5VX0 | pdb_00005vx0

5VX1 | pdb_00005vx1

6ODH | pdb_00006odh

6UXM | pdb_00006uxm

6UXN | pdb_00006uxn

6UXO | pdb_00006uxo

6UXP | pdb_00006uxp

6UXQ | pdb_00006uxq

6UXR | pdb_00006uxr

7K02 | pdb_00007k02

7LK4 | pdb_00007lk4

7M5A | pdb_00007m5a

7M5B | pdb_00007m5b

7M5C | pdb_00007m5c

7OFM | pdb_00007ofm

7OFO | pdb_00007ofo

8CZF | pdb_00008czf