21FB | pdb_000021fb

Structure of minor species of Abeta fibrils from AppNL-FPsen1P117L mice

PDB DOI: https://doi.org/10.2210/pdb21FB/pdb
EM Map EMD-67622: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Mus musculus
Mutation(s): No

Deposited: 2025-12-10 Released: 2026-02-04
Deposition Author(s): Cao, Q., Song, M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Abeta fibrils from brains of 5xFAD and AppNL-FPsen1P117L mice adopt human Type II fibril fold as revealed by cryo-EM

Cao, Q., Zhang, D., Song, M., Zheng, H., Han, J., Xu, K.

To be published.

Macromolecule Content

Total Structure Weight: 54.24 kDa
Atom Count: 3,012
Modeled Residue Count: 408
Deposited Residue Count: 504
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amyloid-beta protein 42	A [auth C] B [auth H] C [auth A] D [auth B] E [auth D] A [auth C], B [auth H], C [auth A], D [auth B], E [auth D], F [auth E], G [auth F], H [auth G], I, J, K, L	42	Homo sapiens	Mutation(s): 0 Gene Names: APP, A4, AD1
UniProt & NIH Common Fund Data Resources
Find proteins for P05067 (Homo sapiens) Explore P05067 Go to UniProtKB: P05067
PHAROS: P05067 GTEx: ENSG00000142192
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05067
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487
RECONSTRUCTION	RELION	4.0

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2026-02-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2026-02-04
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.